Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P09
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    33   0.024
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   1.6  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   4.9  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   4.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   6.5  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   6.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.5  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +1

Query: 13  TYLLHAILPGCGSCLLIKILYPNISMSSLIIVLFVFALAVYKLLXRKTVRWVKTNKYGGV 192
           T++   I   C   L +   Y  I++S +I  + + AL         T+ W K NKYG +
Sbjct: 398 THVFVTIFAVCMGALAVLFNYIGITISWIITFIGI-ALGPAVFGITLTLFWKKMNKYGMI 456

Query: 193 ETAILRTAPGPVCWPIIGSLH 255
               + +  G VCW  +GS +
Sbjct: 457 IGCPMGSITGVVCW--VGSCY 475


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 118 FALAVYKLLXRKTVRWVKTNKYGGVET 198
           FALA Y L  R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 DRTGARLLAHYRESTPSGRP 269
           D   AR +AH +ESTP  +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 178 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 273
           KY GV    L    G   WP+   + L+GGHE
Sbjct: 41  KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 136 KLLXRKTVRWVKTNKYGG 189
           KL   K V W KTN++GG
Sbjct: 290 KLHWPKNVEWWKTNEFGG 307


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 4   SVGTYLLHAILPGCGSCLLIKILYPNI 84
           S GT+ +   LP CG+C  +  ++ N+
Sbjct: 41  SKGTWFIKYYLPSCGACKRLGPMWDNM 67


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 235 PIIGSLHLLGGHESPFQAFTELSXKYGDIFS 327
           P +GS    G    P+  F E   KYGD+F+
Sbjct: 41  PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 82   ISMSSLIIVLFVFALAVYKLLXRKTVRWVKTNKYG 186
            I +SSLI+ L    LAVY  + +K    VK N +G
Sbjct: 1071 IYLSSLIVPLLTGVLAVY--IFKKKFYHVKFNAFG 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,926
Number of Sequences: 5004
Number of extensions: 37824
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)