Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P07
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 110 1e-25
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 107 1e-24
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 106 2e-24
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 35 0.008
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 35 0.008
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 34 0.011
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.31
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 29 0.41
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 0.94
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 2.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 2.9
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 3.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.0
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 110 bits (265), Expect = 1e-25
Identities = 53/112 (47%), Positives = 76/112 (67%)
Frame = +1
Query: 115 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 294
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 295 KLSSMPVGGGXXXXXXXXXXXXXXXEXXKXDNKXXXKXXSESDDDMGFGLFD 450
KL+++P GG + K K ESD+DMGFGLFD
Sbjct: 61 KLATVPTGGA--ASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 107 bits (257), Expect = 1e-24
Identities = 52/112 (46%), Positives = 75/112 (66%)
Frame = +1
Query: 115 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 294
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 295 KLSSMPVGGGXXXXXXXXXXXXXXXEXXKXDNKXXXKXXSESDDDMGFGLFD 450
KLS++P G + + ESD+DMGFGLFD
Sbjct: 61 KLSTVPSAGAVATPAAGGAAGAEATS--AAEEAKEEEAAEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 106 bits (254), Expect = 2e-24
Identities = 51/112 (45%), Positives = 76/112 (67%)
Frame = +1
Query: 115 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 294
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 295 KLSSMPVGGGXXXXXXXXXXXXXXXEXXKXDNKXXXKXXSESDDDMGFGLFD 450
KL+++P GG + K K ESD+DMGFGLFD
Sbjct: 61 KLATVPSGGA--AAAAAPAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 34.7 bits (76), Expect = 0.008
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 250 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEXXKXDNKXXXKXXSESDD 426
L GKD+++L+ G +S P G E + + K K ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDE 101
Query: 427 DMGFGLFD 450
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 34.7 bits (76), Expect = 0.008
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 184 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 354
+K+LS + D E + I L GKD+++L+ + PV GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGE 84
Query: 355 XXXXXEXXKXDNKXXXKXXSESDDDMGFGLFD 450
+ K K ESD+DMGFGLFD
Sbjct: 85 APA-------EEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 34.3 bits (75), Expect = 0.011
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +1
Query: 184 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 354
+K+LS + D E + I L GKD+++L+ ++ P GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGG 83
Query: 355 XXXXXEXXKXDNKXXXKXXSESDDDMGFGLFD 450
E + K K ESD+DMGFGLFD
Sbjct: 84 -----EAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -2
Query: 251 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 123
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -2
Query: 299 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 129
SF+ PA+ S TSL SS S SAS + + + S+S+A+ P S++S +A
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 415 ESDDDMGFGLFD 450
ESD+DMGFGLFD
Sbjct: 301 ESDEDMGFGLFD 312
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 0.94
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 266 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 132
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 299 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 141
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.2
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Frame = -2
Query: 431 MSSSDSEXXXXSXLLSXXXSSXXXXXXXXXXXXXXAPPPTGIDDSFSRPAAISCSTSLPL 252
+SSSD LS SS + PT S+ +++ S+S P
Sbjct: 164 LSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223
Query: 251 SS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 123
SS +T S S S+ T STS++ STAS +++
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 281 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 138
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 181 VEKILSSVGIEADAEKLKKVITELNG 258
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 266 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 123
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 2.9
Identities = 33/117 (28%), Positives = 48/117 (41%)
Frame = -2
Query: 488 GIATSAAYFCKV*SKRPKPMSSSDSEXXXXSXLLSXXXSSXXXXXXXXXXXXXXAPPPTG 309
G TS++YF S P SSS S S S SS + +
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSS---SSKSSSSSKSSSSSSSSSKSSSSSSS 194
Query: 308 IDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 138
S S ++ S S++ P SS + FS+S+ I T S+S++ +V TAS
Sbjct: 195 SSKSSSSSSSSSKSSASPSSSK-SSSKFSSSSFI-TSTTPASSSSSGAIVSNAKTAS 249
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 3.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 110 KKCVTWPRIYWLCWV 154
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 323 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 156
PPP SFS I+ ++ +P SS T + ++ S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 155 PPS 147
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 449 TKLYKSTRRWSLFQFMF 499
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -2
Query: 293 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 138
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = -2
Query: 320 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 159
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 158 LPPSTAS 138
+P +S
Sbjct: 235 IPTGGSS 241
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 287 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 123
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,945
Number of Sequences: 5004
Number of extensions: 23934
Number of successful extensions: 120
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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