Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P04
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   228   2e-60
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  228 bits (558), Expect = 2e-60
 Identities = 108/134 (80%), Positives = 118/134 (88%)
 Frame = +3

Query: 147 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 326
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 327 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 506
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 507 AGTVRRQAVDVSPL 548
           AGTVRRQAVDV+PL
Sbjct: 137 AGTVRRQAVDVAPL 150



 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = +1

Query: 544 PXRRVNQAIWLLCTGAREAAFRNIKTIAECVAXELIN 654
           P RRVNQAIWLLCTGAREAAFRN+KTIAEC+A ELIN
Sbjct: 149 PLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELIN 185


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 539 FTLXAESTKQSGFCAQVHVRLHSEILKQSQSVL 637
           +T    S  QSGF    HV++  EIL+Q+  V+
Sbjct: 172 WTYIRNSDNQSGFVPSSHVKIPHEILQQASRVI 204


>Z54284-5|CAA91062.1|  444|Caenorhabditis elegans Hypothetical
           protein D2085.6 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = -1

Query: 230 VVLQRHIRDLHIVATPSAEKLDFRNVGGLW*RHGFHNHAACLGYVVIPVLLGHELVLFYY 51
           V+L+ +++ +H  +T S+   +   +GGL          +  G+     +L ++LVL Y 
Sbjct: 91  VLLRENVQIIHGHSTFSSLAHETLMIGGLMGLRTVFTDHSLFGFADASAILTNKLVLQYS 150

Query: 50  *IEIITSHCQKYTRKK 3
            I +  + C  YT K+
Sbjct: 151 LINVDQTICVSYTSKE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,208
Number of Sequences: 27780
Number of extensions: 319413
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)