Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P02
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 238 4e-64
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 238 4e-64
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 237 1e-63
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 0.93
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.8
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 6.6
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 25 6.6
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 6.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 6.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.7
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 8.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 238 bits (583), Expect = 4e-64
Identities = 112/179 (62%), Positives = 131/179 (73%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G G
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 169
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 238 bits (583), Expect = 4e-64
Identities = 112/179 (62%), Positives = 131/179 (73%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G G
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 169
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 237 bits (579), Expect = 1e-63
Identities = 111/179 (62%), Positives = 131/179 (73%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P ++FLRNRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G G
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVG 193
Score = 81.0 bits (191), Expect = 1e-16
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 169
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 28.3 bits (60), Expect = 0.93
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 225 KQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 404
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 405 VK-RVATGPKNVPYLVTHDGR 464
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 458 WPHHPLPRPTYQSQR 502
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 212 DFVSGQSILQTIPQ-ENQPGASTRATCGDRLTVSVHTHRQVCPTSML 75
D + + I++ P N+P RA G+ S+H + P+S L
Sbjct: 127 DNTTTERIIENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNL 173
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 162 LIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 278
L+ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = -2
Query: 281 SRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENQPGASTRATCGDRLTVSVHTH 102
S+ R + + IN Y LFH+ + G+S+ +T +E A T T T+ + +
Sbjct: 72 SKDRREALTYFINSYNDLFHDVY-YGDGRSMSKT--EE----AQTIVT----FTIGSYLY 120
Query: 101 RQVCPTSMLWERLSASNAS 45
+ P+ + W+RLS + A+
Sbjct: 121 KYTHPSELFWQRLSDNMAN 139
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 386 SLLRGDTVDCESALNIID*TKQ 321
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 461 PHHPLPRPTYQSQRFHPVRHRNYXDY 538
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 207 RFRSKHTSDDSSGKSARGKHSRN 139
R + KH S D S KS +HSR+
Sbjct: 180 RRKLKHESSDRSDKSDSNRHSRH 202
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 464 HHPLPRPTYQSQRFHPVR 517
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,426
Number of Sequences: 5004
Number of extensions: 55179
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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