Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_P02
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 219 1e-57
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 215 3e-56
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 214 5e-56
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 3.9
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 5.1
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.1
11_06_0682 - 26253319-26253575,26254009-26254114 28 6.8
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 6.8
04_01_0252 - 3329712-3331061 27 8.9
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 8.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 8.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 219 bits (535), Expect = 1e-57
Identities = 105/193 (54%), Positives = 127/193 (65%)
Frame = +3
Query: 30 WREALRSI*SA*TLPKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNE 209
W L+ P H L P P ++ LRNRLKYALT E
Sbjct: 17 WARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Query: 210 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAK 389
V+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK
Sbjct: 77 VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 136
Query: 390 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 569
+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 137 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNI 196
Query: 570 CMITGGRNLGACG 608
M+TGGRN G G
Sbjct: 197 VMVTGGRNTGRVG 209
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 215 bits (524), Expect = 3e-56
Identities = 100/179 (55%), Positives = 124/179 (69%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
PKH L P P ++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN G G
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 160
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 214 bits (522), Expect = 5e-56
Identities = 99/179 (55%), Positives = 124/179 (69%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
PKH L P P ++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN G G
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 29 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPL 160
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL 44
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 145 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 32
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 138 LWGPVDGLGAYTPPSLSNIHALGAFKR 58
L G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 324 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 428
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 83 MLDKLGG--VYAPRPSTGPHKLRECL---PLA---DFPEESSEVCFDRKRSPENCETTP 235
ML+KL V PRP TG KLR+ PL D E+S + R +S TTP
Sbjct: 1 MLEKLWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGAAYKRTQSMPTTPTTP 59
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 450 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 584
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 137 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKS 9
C D+ V TH+ V P S W+R AS G W S
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDRYEASRPE-GHTITWNEFSS 153
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 287 KSSRISRVSPNFPI-NLYEALFHNFQDFVSGQSILQTIPQENQPGAS 150
++ I RVS + + NL E +F F D + + + TIP+ N P S
Sbjct: 1487 RNPEIRRVSGDASVENLLEKMFGVFMDHANLWADISTIPEVNSPELS 1533
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 293 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 198
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,890
Number of Sequences: 37544
Number of extensions: 393137
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -