Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P02
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   200   6e-52
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50796-2|CAA90669.2|  261|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   4.6  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  200 bits (488), Expect = 6e-52
 Identities = 94/161 (58%), Positives = 115/161 (71%)
 Frame = +3

Query: 126 PVPTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 305
           P P     + P  +FLRNRLKYAL   E  KI+ QR+++VDGKVRT   +P GFMDVV+I
Sbjct: 32  PGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAI 91

Query: 306 XKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 485
            +TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP
Sbjct: 92  ERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151

Query: 486 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGACG 608
            +KVND+I  +I+T KI D +KFE GNL  +TGGRN+G  G
Sbjct: 152 HVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVG 192



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/45 (77%), Positives = 38/45 (84%)
 Frame = +2

Query: 35  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADF 169
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL+ F
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLF 46


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 348 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 479
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical
           protein E01G4.5 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +2

Query: 26  NMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLADFPEESSEVCFDRK 205
           N A  P K  + +N  + ++L+   GV   R   GP     CLP A       ++ FD+K
Sbjct: 115 NRASLPPKGTRDVNRMRQFILEHTFGVKNER-ICGPS---HCLPKA---LAVGKLLFDKK 167

Query: 206 RSPENCETTPHKG*WES 256
           R P++ E    +  W+S
Sbjct: 168 RCPDSVERAALENKWQS 184


>Z50796-2|CAA90669.2|  261|Caenorhabditis elegans Hypothetical
           protein T05A6.5 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 132 PTSCASACPWLIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 272
           P+ CAS C  L+F  N     L+ NE++K+    + K++G ++ + T
Sbjct: 34  PSDCASVCAVLVFNSNT---DLSENELVKLF-SNMSKINGDIKIENT 76


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 505  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 341
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 464 HHPLPRPTYQSQRFHPVRHRNYXDYGLH 547
           HH    PTY    F+P  H++Y  + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,599
Number of Sequences: 27780
Number of extensions: 315157
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)