Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P01
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    72   9e-12
UniRef50_Q8IIG0 Cluster: Putative uncharacterized protein; n=1; ...    32   9.1  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 72.1 bits (169), Expect = 9e-12
 Identities = 45/111 (40%), Positives = 46/111 (41%)
 Frame = +2

Query: 272 RAQGGQRPSNEKATSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXMETTNVPQSTNXXXXX 451
           + QGGQRPSNEKATSQS                           METTNVPQSTN     
Sbjct: 46  QGQGGQRPSNEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVPQSTNQQQQS 105

Query: 452 XXXXXXXXXXXXXXXXXXXXXXXXKPVNAPAKSEPSTKILTNPKFEPNNXN 604
                                   KPVNAPAKSEP       PKFEPNN N
Sbjct: 106 QQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQEN-TDKPKFEPNNQN 155


>UniRef50_Q8IIG0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1252

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 137 QTASHE*LRQLKEDLVDHRNLNGKEVVVVITEDFVIRDLSIIDLNRAQ 280
           Q  SH   + +K+++  H   N  EV+  I E  + +D +IID N  Q
Sbjct: 680 QNISHVTQQHIKQNITTHMQQNVNEVITYIHEHLLNKDKNIIDQNLKQ 727


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,311,095
Number of Sequences: 1657284
Number of extensions: 3994213
Number of successful extensions: 10112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10102
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)