Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P01
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.5  
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    25   8.5  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 204 PLRLRWSTKSSLSCRSYSWLAVCSSSVARDFLVLIVVIFTVNSL 73
           P   RW     +  R   W+ +  S++   FL+ +V I    +L
Sbjct: 248 PWATRWDKYMHIESRQIRWIFIIHSAIIDTFLIFVVSIILYRTL 291


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 164 QLKEDLVDHRNLNGKEVVVVITEDFVIRDLSIID-LNRAQGGQRPS 298
           Q+   L+++   NGK V + +TE   I  +S+ + +++  GG  PS
Sbjct: 663 QIPAFLLENSTKNGKAVKIYVTEPRRISAISLANRVSQELGGNPPS 708


>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 280 LCPVEVYYAQISNYEILCYYHDDLLAVEVAVVHQILFELPKL 155
           L P+   Y  +S Y      +DDL+  E     + L  LPK+
Sbjct: 20  LLPISNAYVHLSGYRKYGLRYDDLMLEENDDTQKALSRLPKM 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,970
Number of Sequences: 5004
Number of extensions: 17215
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)