Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_P01
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 182 VDHRNLNGKEVVVVITEDFVIRDLSIIDLNRAQGG 286
           +D    NGK  V ++  D V   L++I      GG
Sbjct: 68  IDVDRWNGKTFVTILRNDGVPSSLNVISNKIGNGG 102


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 64  FKLSPAQRGKSYGVAGVSC 8
           FK++P  +G  Y  A +SC
Sbjct: 53  FKIAPLFKGIGYAAAVMSC 71


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 524 KPVNAPAKSEPSTKILTNPKFEPNN 598
           +PV  P    P  ++   P+ EP N
Sbjct: 102 RPVYIPQPRPPHPRLRREPEAEPGN 126



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 524 KPVNAPAKSEPSTKILTNPKFEPNN 598
           +PV  P    P  ++   P+ EP N
Sbjct: 128 RPVYIPQPRPPHPRLRREPEAEPGN 152


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  TINRKNNNYQNKKVPCYARTAN 141
           TINRKN++Y + +      T N
Sbjct: 168 TINRKNSDYLDNQEVSMENTEN 189


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 223 YHDDLLAVEVAVVHQILFELPKLFMACSLQF*RSKGLSC 107
           +HDDL +   A V  +   +P      S +   ++GL C
Sbjct: 775 HHDDLYSQSYAEVGVLFASMPNFADFYSEESINNQGLEC 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,975
Number of Sequences: 438
Number of extensions: 1350
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)