Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O23
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 150 9e-37
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 146 1e-35
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 91 6e-19
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 58 8e-09
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 57 1e-08
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 31 0.83
07_03_0039 - 12718972-12720699 29 2.5
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 7.7
05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866 28 7.7
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 150 bits (364), Expect = 9e-37
Identities = 64/114 (56%), Positives = 90/114 (78%)
Frame = +3
Query: 78 SNYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYF 257
S++K +H+ E+R+AE +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF +
Sbjct: 4 SSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVY 63
Query: 258 LIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEXFFLYIAFSDENVYG 419
++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DE FLY+ +S EN +G
Sbjct: 64 VVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 146 bits (355), Expect = 1e-35
Identities = 63/115 (54%), Positives = 89/115 (77%)
Frame = +3
Query: 78 SNYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYF 257
+++K EH E+R+AE +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +
Sbjct: 168 TSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVY 227
Query: 258 LIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEXFFLYIAFSDENVYGN 422
++RKRI L PE A+F FV N +PPT++ M ++Y+E+ DE FLY+ +S EN +G+
Sbjct: 228 VVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 91.5 bits (217), Expect = 6e-19
Identities = 38/69 (55%), Positives = 53/69 (76%)
Frame = +3
Query: 213 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEXFFLYI 392
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DE FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 393 AFSDENVYG 419
+S EN +G
Sbjct: 1944 TYSGENTFG 1952
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 105 EKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 215
E+R+AE +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 57.6 bits (133), Expect = 8e-09
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = +3
Query: 111 RKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 290
R+ EGE+ RR + VIVEK ++ L +++K+K +HL P
Sbjct: 192 REEEGERERR---GKGQVIVEKFSRSNLPEMEKRK-------------------LHLSPG 229
Query: 291 DALFFFVNNVIPPTSATMGSLYQEHHDE-XFFLYIAFSDENVYG 419
ALF FVNN +P T+ MGS+Y+ + DE FLY+ +S E +G
Sbjct: 230 TALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-XFFLYIAFSDENVYG 419
++++HL P ALF FVNN +P T+ MGS+Y+ + DE FLY+ +S E +G
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 81 NYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLV 224
N KEE + EK++ KI++ P R EK P G K+ ++V
Sbjct: 652 NEKEEPTSEKKQPVSAKIKKTVPKRTSGTKEKKPDTDQGGKRKRNWMV 699
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 335
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 413 LWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCII 514
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>05_04_0295 + 19940822-19940906,19940976-19941902,19941956-19942866
Length = 640
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 508 YYFMVFXXLLIGI*YYF-CLHMNSIKLFK 591
YY++V L++ + YYF C H ++K F+
Sbjct: 576 YYWLVTFLLVLNLAYYFVCFHFYTLKSFE 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,322
Number of Sequences: 37544
Number of extensions: 297287
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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