Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O22
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   205   3e-54
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   205   3e-54
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    29   0.53 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.8  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.0  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.0  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  205 bits (500), Expect = 3e-54
 Identities = 95/131 (72%), Positives = 111/131 (84%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLXRLKKIRAH 419
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDL RLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRV 452
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  205 bits (500), Expect = 3e-54
 Identities = 95/131 (72%), Positives = 111/131 (84%)
 Frame = +3

Query: 60  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 239
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 240 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLXRLKKIRAH 419
             E+E+I+TI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDL RLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 420 RGMRHYWGLRV 452
           RG+RH   LRV
Sbjct: 121 RGLRHALDLRV 131


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 387 DLXRLKKIRAHRGMRHYWGLRV 452
           D+ RL  IR +RGMRH  GL V
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPV 97


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 390 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 289
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 215
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 289 YCXGFDMIVIIFSTSXSVHSPARLSRSMSAFLRTMLEYLR 170
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 356 LLQLGFKTP*RFGXAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 499
           L  L FK+       + D   +R AT +  S  W A+  YWQ     W
Sbjct: 43  LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 119 DVRIHDTKNMLKFVWNDQRHFG*VSNQRSXN 27
           D  + +  + +KF WN       VSN +S N
Sbjct: 147 DKAVENNSDFIKFDWNSDEDEDSVSNDKSKN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,228
Number of Sequences: 5004
Number of extensions: 40925
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)