Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O22
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 199 1e-51
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 188 2e-48
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 186 7e-48
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 76 1e-14
03_01_0404 + 3138624-3140096 31 0.71
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 29 2.9
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 3.8
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 28 3.8
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 28 5.0
03_01_0646 + 4742398-4742994,4743681-4744085 27 6.6
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 27 8.8
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 27 8.8
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 199 bits (485), Expect = 1e-51
Identities = 83/125 (66%), Positives = 111/125 (88%)
Frame = +3
Query: 78 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEK 257
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T E+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 258 IITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLXRLKKIRAHRGMRHY 437
++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DL RLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 438 WGLRV 452
WGLRV
Sbjct: 123 WGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 188 bits (458), Expect = 2e-48
Identities = 87/147 (59%), Positives = 115/147 (78%), Gaps = 16/147 (10%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 225 -----------AGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 371
AGE T E+E+++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 372 SKLREDLXRLKKIRAHRGMRHYWGLRV 452
KLR+DL RLKKIR HRG+RHYWGLRV
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 186 bits (454), Expect = 7e-48
Identities = 87/149 (58%), Positives = 115/149 (77%), Gaps = 18/149 (12%)
Frame = +3
Query: 60 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 224
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 225 -------------AGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSN 365
AGE T E+E+++T+++NP Q+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 366 LDSKLREDLXRLKKIRAHRGMRHYWGLRV 452
LD KLR+DL RLKKIR HRG+RHYWGLRV
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/51 (66%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = +3
Query: 303 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLXRLKKIRAHRGMRHYWGLRV 452
W L R+KD DG++SQ+ S+ LD KLR+DL RLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>03_01_0404 + 3138624-3140096
Length = 490
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 333 DGKYSQLTSSNLDSKLREDLXRLKKIRAHRGMR 431
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 381 REDLXRLKKIRAHRGMRHYWGLRV 452
R + RLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 205 SAFLRTMLEYLRPTPLIAVIANITL 131
S+FL TM EY+R P A +AN T+
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKTV 279
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 391 WXGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 498
W FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 GRRYSNIV--LKKADIDLDKRAGECTEXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGK 341
G+ + N++ LK D DL E K+ +MS P K+ W + D+ DGK
Sbjct: 514 GKPWRNVLEHLKIQDTDLWSSTNEDNCLWNAKLFPVMSLPETLKVGMWLMGSTCDL-DGK 572
Query: 342 YSQLTSSNLDSKLRE 386
+ L + L E
Sbjct: 573 VASLWKESRRISLEE 587
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 143 CDDGYQRCWPEVLQHCSQKSR 205
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 397 GSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 504
G + L C+++ F+C +STL + ELL++
Sbjct: 185 GQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 24 CVXGTLVRNLTKMSLVIPDKFQHILRIMNTNI-----DGKRKVMFAMTAIK 161
C G L +NL+ VI QH +M++N+ + K+K+ FA +K
Sbjct: 712 CNDGKLHKNLSLGKCVIKGILQHTRHLMDSNVLDVTYEDKQKLRFAFEQLK 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,225
Number of Sequences: 37544
Number of extensions: 263031
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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