Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O20
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   2.0  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    24   4.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   4.6  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    24   4.6  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    24   4.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    23   8.1  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 91  YHNLFKLGSLSRDTTKNVSHFYKKVFD 11
           Y ++ ++ SLSR  ++    FY++VFD
Sbjct: 168 YRSVERIASLSRSISEFQKSFYEQVFD 194


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 112 TVITK*Y-YHNLFKLGSLSRD-TTKNVSHFYKKVFDKL 5
           T  TK Y  H +  + +LS   TT N+  F KK+ DK+
Sbjct: 44  TYATKNYPAHTVINMPALSPTMTTGNIGAFQKKIGDKI 81


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 83   VMIILFSNHSWYVCIFG 133
            V+  +   HSW +C+FG
Sbjct: 2252 VLAWISRTHSWIICVFG 2268


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 169 LVRYKNMYILITTENAHIPTVITK*Y 92
           ++ +KNM  ++T    H+P V +K Y
Sbjct: 258 ILSHKNMVAIVTAIVKHVPEVTSKDY 283


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 19  LFYKNEIHFLWYLWTVN 69
           +F K    FLW+LW  +
Sbjct: 236 IFAKKRFSFLWFLWNTS 252


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -1

Query: 188 HFISLISCQIQKYVYLNYNRK-CTHTNCDY 102
           H   L+ C     +YL Y RK  TH   D+
Sbjct: 161 HVARLVLCVFATAIYLTYRRKRHTHDPLDF 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,035,337
Number of Sequences: 5004
Number of extensions: 18136
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)