Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O20
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0369 - 22760383-22760440,22761410-22761497,22761582-227616...    25   9.5  
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281...    25   9.5  
01_06_0663 - 30991390-30992340                                         25   9.5  

>11_06_0369 -
           22760383-22760440,22761410-22761497,22761582-22761649,
           22761742-22761858,22761964-22762084,22762172-22762247,
           22762336-22762435,22762524-22762615,22763514-22763664,
           22764698-22764792,22764900-22765193
          Length = 419

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 157 KNMYILITTENAHIPTVITK*YYHNLFKLGSLSRDTTKNVS 35
           KNM  L+T + AH+  + T  +  +   L S S D+T  V+
Sbjct: 323 KNMRSLVTVKKAHLGIITTLAFSQDSRTLLSTSFDSTARVT 363


>03_06_0110 -
           31727376-31727381,31727554-31727664,31728071-31728133,
           31729202-31729331,31729532-31729701,31729800-31729859,
           31729941-31730018,31730108-31730197,31730275-31731118,
           31731220-31731281,31731362-31731423,31731511-31731700
          Length = 621

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 191 KHFISLISCQIQKYVYLNYNRKC--THTNCDY--*IVLS*PI 78
           KH    +  +I+  V+LNY+  C  THTN D    +VLS P+
Sbjct: 521 KHENMYLPRRIRSIVFLNYSLVCTLTHTNKDVSCSLVLSVPL 562


>01_06_0663 - 30991390-30992340
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 198 MAKTFHISHFLSDTKICIS 142
           MA  F++ HF+ D  IC+S
Sbjct: 246 MAAGFYVRHFVKDLGICLS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,648,254
Number of Sequences: 37544
Number of extensions: 86377
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)