Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O20
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 28 1.6
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 28 1.6
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 28 1.6
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr... 26 4.8
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li... 26 4.8
AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical ... 26 4.8
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr... 26 6.4
U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone... 25 8.4
U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone... 25 8.4
AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear recep... 25 8.4
AF067944-3|AAC17674.2| 347|Caenorhabditis elegans Seven tm rece... 25 8.4
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 36 DTFFVVSLDSEPSLNRL**YYL 101
D F++V+++++PSLN L YY+
Sbjct: 476 DRFYLVNMNADPSLNELLVYYI 497
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 36 DTFFVVSLDSEPSLNRL**YYL 101
D F++V+++++PSLN L YY+
Sbjct: 476 DRFYLVNMNADPSLNELLVYYI 497
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 36 DTFFVVSLDSEPSLNRL**YYL 101
D F++V+++++PSLN L YY+
Sbjct: 476 DRFYLVNMNADPSLNELLVYYI 497
>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
protein F31D5.5 protein.
Length = 1788
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 158 QKYVYLNYNRKCTHTNCDY*IVLS*PIQTRFTVQRYHKKCIS 33
QKY+ N +C NC Y I ++ F V +K+C++
Sbjct: 69 QKYIVFFVNLECGADNCAYQITINNYAWNVFKVLINNKQCLA 110
>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
protein MTH-1 protein.
Length = 1757
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 158 QKYVYLNYNRKCTHTNCDY*IVLS*PIQTRFTVQRYHKKCIS 33
QKY+ N +C NC Y I ++ F V +K+C++
Sbjct: 38 QKYIVFFVNLECGADNCAYQITINNYAWNVFKVLINNKQCLA 79
>AF016419-3|AAG24048.1| 529|Caenorhabditis elegans Hypothetical
protein F07G11.3 protein.
Length = 529
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 221 TRILTKT*WLKHFISLI-SCQIQKYVYLNYNRKCTHTNC 108
TR+ +K ++++ L+ C +KY L YN + T C
Sbjct: 440 TRVFSKLPRIRYYSDLVLKCYNEKYYDLFYNNRKTEITC 478
>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
protein Y70C5A.2 protein.
Length = 1037
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 88 HNLFKLGSLSRDTTKNVSHFYKKVFDKL 5
H L K+GSL+ T + VSH ++V D L
Sbjct: 661 HILGKVGSLTIQTLRKVSHKTRQVVDFL 688
>U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform b protein.
Length = 434
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 IITYSNSVH-CPEIPQKMYLIFIKKYSTSF 4
+I ++N +H PE+P ++ +KK+S++F
Sbjct: 173 LIGWTNMLHPLPEVPLADKVLLLKKFSSAF 202
>U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform a protein.
Length = 435
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 IITYSNSVH-CPEIPQKMYLIFIKKYSTSF 4
+I ++N +H PE+P ++ +KK+S++F
Sbjct: 173 LIGWTNMLHPLPEVPLADKVLLLKKFSSAF 202
>AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear receptor
NHR-14 protein.
Length = 288
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 90 IITYSNSVH-CPEIPQKMYLIFIKKYSTSF 4
+I ++N +H PE+P ++ +KK+S++F
Sbjct: 26 LIGWTNMLHPLPEVPLADKVLLLKKFSSAF 55
>AF067944-3|AAC17674.2| 347|Caenorhabditis elegans Seven tm
receptor protein 224 protein.
Length = 347
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -3
Query: 102 LNSIIITYSNSVHCPEIPQKMYLIFIKKYSTSF 4
LNSI++T NSV+ + ++++ + + + + F
Sbjct: 232 LNSIVVTTMNSVNLRNLQRQLFYVLVIQTTVPF 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,661,510
Number of Sequences: 27780
Number of extensions: 101040
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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