Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O19
(526 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 143 3e-33
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 122 4e-27
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 118 8e-26
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 109 3e-23
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 96 4e-19
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 96 4e-19
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 87 2e-16
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 74 2e-12
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 72 9e-12
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 71 2e-11
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 66 4e-10
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 66 6e-10
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 65 8e-10
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 64 1e-09
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 58 9e-08
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 2e-04
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 43 0.004
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 42 0.007
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 39 0.081
UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subuni... 37 0.25
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 36 0.43
UniRef50_UPI0000E813D6 Cluster: PREDICTED: hypothetical protein;... 32 7.0
UniRef50_UPI00006CB1D5 Cluster: hypothetical protein TTHERM_0030... 32 7.0
UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genom... 32 7.0
UniRef50_Q9AIZ3 Cluster: Valyl-tRNA synthetase; n=3; Candidatus ... 32 9.3
UniRef50_Q4BX64 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 143 bits (346), Expect = 3e-33
Identities = 66/109 (60%), Positives = 85/109 (77%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
LLKKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KGFT V KK K ++PA
Sbjct: 19 LLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA 78
Query: 304 KNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 450
KN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LRSQ+P
Sbjct: 79 KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKP 127
Score = 36.3 bits (80), Expect = 0.43
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 78 SSSLNWMIIRNNNAFLAEEAQYQK 149
SS LNW+IIRNNNAFL ++ +K
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKK 27
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 122 bits (295), Expect = 4e-27
Identities = 59/109 (54%), Positives = 76/109 (69%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
LLK+R+I+KPFS EP N+TNL SFRY+GL+H K + + ++KG VY + K KPA
Sbjct: 19 LLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTITITP-AEKKGVNFVYNRKKVLNKPA 77
Query: 304 KNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 450
K ++ K G RR+L K+ ++KAN YR DL A LRRASAILRSQRP
Sbjct: 78 KAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASAILRSQRP 126
Score = 31.9 bits (69), Expect = 9.3
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 69 VKMSSSLNWMIIRNNNAFLAEEAQYQK 149
+ SS LNW+I+R++NAFL + +K
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRK 27
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 118 bits (284), Expect = 8e-26
Identities = 60/108 (55%), Positives = 71/108 (65%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
LLKKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D KGF V K+AK KP
Sbjct: 17 LLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGKGFVVTTKRAKQQNKPG 76
Query: 304 KNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 447
K+ I AG RRSLYK++R L YR DL + LR+ASAIL SQ+
Sbjct: 77 KSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAILESQK 124
Score = 32.3 bits (70), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 75 MSSSLNWMIIRNNNAFLAEEAQYQK 149
MS+ L WMI RNNNA+L ++ +K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKK 25
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 109 bits (263), Expect = 3e-23
Identities = 55/111 (49%), Positives = 72/111 (64%)
Frame = +1
Query: 121 SLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 300
S L KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKP
Sbjct: 15 SFLIKRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKP 73
Query: 301 AKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 453
A + +R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 74 ATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 96.3 bits (229), Expect = 4e-19
Identities = 46/99 (46%), Positives = 61/99 (61%)
Frame = +1
Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 333
F+ EPNNV N +SF++NGL++KK VGV D KG K++K KPAK +R
Sbjct: 30 FTTEPNNVMNKNSFKFNGLVNKKVVGVSSAADNKGVLFKTKRSKVVSKPAKMFVRATLSK 89
Query: 334 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 450
RR+ +K+ L+ YR DL + +RRASAIL SQRP
Sbjct: 90 DRRRAFKSIKKNLECTEYRPDLAELAVRRASAILSSQRP 128
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 96.3 bits (229), Expect = 4e-19
Identities = 47/105 (44%), Positives = 66/105 (62%)
Frame = +1
Query: 136 RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLI 315
R+ K +KEPNNVT L++F+YNGL++KK VGV P KG + +K KA KP K +
Sbjct: 19 RSQGKTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGKGVVITTRKNKAANKPGKIMN 78
Query: 316 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 450
+ +RR+L ++ + N+YR DL +RRA AILRSQ+P
Sbjct: 79 KITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRACAILRSQKP 123
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 87.0 bits (206), Expect = 2e-16
Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
L+KKRNIKK FS +P N +++ R+ G I K+A+ V + KG T VY K KPA
Sbjct: 18 LVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGKGVTFVYLAHKGATKPA 77
Query: 304 KNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRASAILRSQRPI 453
K L R G RR++ ++ +K +YR DL + RRASAIL+SQR I
Sbjct: 78 KRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAILKSQRAI 128
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 73.7 bits (173), Expect = 2e-12
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
L ++R I+K FS+EP N+ ++S YNGL + KAVGV D K V KK PA
Sbjct: 10 LRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKKTGKKNLPA 69
Query: 304 KNLIRRPFKAGARRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQR 447
+++I+ K G R + K V+ L+K + R K RRAS +LRS R
Sbjct: 70 QSVIKTTIKRGGARGIVKSVQGLVKGRNAR--FAKLAARRASQLLRSVR 116
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 71.7 bits (168), Expect = 9e-12
Identities = 38/94 (40%), Positives = 51/94 (54%)
Frame = +1
Query: 118 HSLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRK 297
H L KR + FS++P N+ N + FRY G +HKKA+G+ E KG V K K
Sbjct: 14 HCFLMKRG-PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGKGVVVTTKNVAKDHK 72
Query: 298 PAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDL 399
PAK + R F G RR+L K++ L YR +L
Sbjct: 73 PAKAVTRTKFVRGRRRTLQKIRNLTCKQKYRREL 106
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 70.5 bits (165), Expect = 2e-11
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Frame = +1
Query: 118 HSLLKKRNIK--KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKAT 291
++ L KRN FS++P N+ N HSF+Y G + KA+G V+ + G V+ KK+
Sbjct: 21 NAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTENGGVVVLTKKSGNA 79
Query: 292 RKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRP 450
++P KN +R F KA R+ V N YR DL + + R SAI RSQ+P
Sbjct: 80 QQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 66.5 bits (155), Expect = 4e-10
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPF-K 330
FS++P N+ N SF+Y G + KAVG V+ + G V+ KK ++PAKNL+ +
Sbjct: 35 FSRDPLNLQNKQSFKYAGYANTKAVG-VQATENGGVVVITKKPGNPQQPAKNLVSVSWGP 93
Query: 331 AGARRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 450
A R +YK V N YR DL + + R SAI RSQ+P
Sbjct: 94 NAATRKIYKAVASKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 65.7 bits (153), Expect = 6e-10
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
++K++ I + FS+EP N+ LHS++Y+GL++ KAVG+ KG + K AK +
Sbjct: 18 IVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKGVVITTKNAKQSSSAI 77
Query: 304 KNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLR 417
K + K G RR+ V ++ YR DL + R
Sbjct: 78 KKTVNVATLKKGGGRRTAGAVSNVVAKKGYRADLTREPTR 117
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 65.3 bits (152), Expect = 8e-10
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 333
F++EP NV+ ++ R++GL + KAVGV N R + K +KPAK L R+ A
Sbjct: 30 FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88
Query: 334 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 450
A R YK + + YR DL K ++ RASAIL SQRP
Sbjct: 89 NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 64.5 bits (150), Expect = 1e-09
Identities = 37/103 (35%), Positives = 53/103 (51%)
Frame = +1
Query: 139 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIR 318
N K FSKE NN+TN+HS++++GL +KK V + + + K K KP ++ +
Sbjct: 28 NSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNK 87
Query: 319 RPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 447
K R V + N+YR DL KA L R SAI + R
Sbjct: 88 SILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 58.4 bits (135), Expect = 9e-08
Identities = 39/104 (37%), Positives = 58/104 (55%)
Frame = +1
Query: 121 SLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 300
S L KRN + F++E N+ N + +Y+GL KAV + + D+K T+ K KAT+KP
Sbjct: 16 SFLVKRNGNE-FAREKFNLLNRNCRKYSGLASTKAVDISIS-DKK-VTLTTKIEKATKKP 72
Query: 301 AKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 432
AK P + GAR ++ + N+YR DL KA L + S +
Sbjct: 73 AKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.9 bits (94), Expect(2) = 2e-04
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 208 LIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKAN 381
L +A+GV + + G + KK +++PAK+L + GA R +YK V N
Sbjct: 88 LTSNQAIGV-QATENGGVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKN 146
Query: 382 HYRTDLCKATLRRASAILRSQR 447
YR DL + + R SAI RSQ+
Sbjct: 147 GYRADLRQEAVSRVSAIRRSQK 168
Score = 25.0 bits (52), Expect(2) = 2e-04
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 118 HSLLKKRNIKK--PFSKEPNNVTNLHSFR 198
++ L KRN FS++P NV N HSF+
Sbjct: 21 NAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 43.2 bits (97), Expect = 0.004
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +1
Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP-----AKNLIR 318
FS+E N+ N + +Y+GL + K V + +P G + K KA KP A++ +
Sbjct: 26 FSREKGNLLNKSAHKYSGLANSKVVSI--HPSAAG-GITITKIKADAKPNQVASARSHVT 82
Query: 319 RPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 447
G RR+ YR DL + R SA+LR++R
Sbjct: 83 LKRSTGPRRANKIAAAETAGKGYRADLRAVAVARTSALLRAER 125
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 42.3 bits (95), Expect = 0.007
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
L+K++ I S++P + NL + +GL H KAVGV V+ K K KPA
Sbjct: 64 LVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSGKICVITKVVKNANKPA 123
Query: 304 KNLIRRPFKAGARRSLYKVKRLLK-ANHYRTDLCKATLRRASAILRS 441
K+ FK + S K + K Y+ + + RASAI R+
Sbjct: 124 KSRHIVEFKP-TKSSRAIAKAVSKTVQGYKDEQIYDAIVRASAIKRA 169
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 38.7 bits (86), Expect = 0.081
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 121 SLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRK- 297
S +KK N F+ EP N+ NL++ +Y+GL ++++ + P+ G V K AK T+K
Sbjct: 16 SFIKKNN-GFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNGKLV--KNAKITKKN 72
Query: 298 PAKNLIRRPFK 330
+ IR P K
Sbjct: 73 TGSSTIRCPKK 83
>UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subunit;
n=2; Bacillus|Rep: Type III restriction enzyme, res
subunit - Bacillus coagulans 36D1
Length = 1068
Score = 37.1 bits (82), Expect = 0.25
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +1
Query: 124 LLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPA 303
+L NIK+ + + V +H R GLI + + + E RKG +++ K T + A
Sbjct: 48 VLAAENIKEAYGT--SQVDRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEEA 105
Query: 304 KNLIRRPFK 330
K L+R F+
Sbjct: 106 KALLRLAFR 114
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 36.3 bits (80), Expect = 0.43
Identities = 34/98 (34%), Positives = 44/98 (44%)
Frame = +1
Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 333
FS EP NVT SFR +GL + K + + E+ KG KPA +
Sbjct: 34 FSAEPGNVTAEVSFRASGLANAKTIDIREHDGGKG------------KPAATCDGKKLCG 81
Query: 334 GARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 447
+ +VK KA R DL KA L R SAI ++ R
Sbjct: 82 SFKSQAGEVKIAAKA---RPDLEKAALARISAINKAGR 116
>UniRef50_UPI0000E813D6 Cluster: PREDICTED: hypothetical protein;
n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 1381
Score = 32.3 bits (70), Expect = 7.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 69 VKMSSSLNW--MIIRNNNAFLAEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESRWCRG 239
V+ S W + NNN F A Q+ V + CD PL Q+Q + CRG
Sbjct: 384 VRQSDQKQWWELFDHNNNRFYYYNAITQQTVWHRPQGCDIVPLAQLQAMKHSSQPDCRG 442
>UniRef50_UPI00006CB1D5 Cluster: hypothetical protein
TTHERM_00300660; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00300660 - Tetrahymena
thermophila SB210
Length = 1262
Score = 32.3 bits (70), Expect = 7.0
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 100 SSATTMHSLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 279
+S ++ + + +NI+KP K+ N +TN ++ + + + K ++ N D FT + +
Sbjct: 453 TSTKSITNFKQIKNIEKPIQKQINQITNNYTHQNSMIFSKHSLQQENNNDELNFTQLSQL 512
Query: 280 AKATRK-PAKNLIRRPFKAGARRSL 351
RK K +I+ ++R +
Sbjct: 513 KGGERKNKMKEIIKGTIFINSQRQI 537
>UniRef50_A7NWC3 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 797
Score = 32.3 bits (70), Expect = 7.0
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 166 PNNVTNLHSFRYNGLIHKK-AVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR 342
PN +S NGL+ +K + + K F+V A + L R+ G +
Sbjct: 237 PNLAKPKNSLVLNGLVSEKDGLNNTSDTTDKSFSVTGTSQSAAPEEKFGLSRKVHSGGTK 296
Query: 343 R-SLYKVKRLLKANHYRTDLCKATLRRA 423
R S+ + K L +YRT CK + R A
Sbjct: 297 RESMLRQKSLHLEKNYRTYGCKGSSRTA 324
>UniRef50_Q9AIZ3 Cluster: Valyl-tRNA synthetase; n=3; Candidatus
Carsonella ruddii|Rep: Valyl-tRNA synthetase -
Carsonella ruddii
Length = 267
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 115 MHSLLKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAK 285
+H +++ +N +K FSK NN+ N + + N I KK +++N ++ ++ KK K
Sbjct: 91 LHGIIRNKNNEK-FSKSMNNILNFNLLKNNFFIIKK--NLLKNSLKENIKLLIKKYK 144
>UniRef50_Q4BX64 Cluster: Putative uncharacterized protein; n=1;
Crocosphaera watsonii WH 8501|Rep: Putative
uncharacterized protein - Crocosphaera watsonii
Length = 527
Score = 31.9 bits (69), Expect = 9.3
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 127 LKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAK 306
L+ + I + P N+ + F YN V V PD G TV YK+ TR+ AK
Sbjct: 35 LRHKEILDIIGEAPENLEEIIQFIYNDFNQLDDVFVT--PDSTG-TVNYKEGGITREQAK 91
Query: 307 NLIRRPFKAGAR-RSLYKVKRL 369
RR AR ++L +KRL
Sbjct: 92 T-ARRGLAIEAREKTLENIKRL 112
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,399,107
Number of Sequences: 1657284
Number of extensions: 9566439
Number of successful extensions: 23708
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23694
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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