Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O19
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    65   5e-12
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    29   0.42 
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   3.0  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   4.0  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = +1

Query: 154 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 333
           F++EP NV+  ++ R++GL + KAVGV  N  R    +     K  +KPAK L R+   A
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88

Query: 334 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 450
            A  R  YK +   +    YR DL K ++ RASAIL SQRP
Sbjct: 89  NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  VKMSSSLNWMIIRNNNAFLAEEAQY 143
           + +S+ L W +IR+NN FL +  ++
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEF 25


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 273 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFD 142
           +HYC S  +  LHDT   LV       G + S +++     + D
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMID 294


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 230 PTAFL*IKPLYLKEWRLVTLFGSLL--NGFLILRFFSKECIVVADDH 96
           PT+F  IKPL  + +R+  L+  LL  +   +L   + E +V+  DH
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLHCSNMSLLSDPNGEAMVMQRDH 393


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 48  PNTTCSQCVRRXK 10
           PNTTC QC+ R K
Sbjct: 264 PNTTCPQCMARRK 276


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 213 SQESRWCRGEP*QEGIHSSVQESKGY 290
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,950
Number of Sequences: 5004
Number of extensions: 38372
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)