Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O19
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     67   7e-12
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     66   2e-11
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     65   3e-11
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    34   0.061
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   9.2  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = +1

Query: 139 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNL 312
           N K  FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K  +  KPA   
Sbjct: 28  NAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLY 86

Query: 313 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 441
            +   +   R+    VK  +  N+YR DL K  L R SA+ RS
Sbjct: 87  HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +1

Query: 139 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 315
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 316 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 441
           +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +1

Query: 139 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 315
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 316 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 441
           +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 100 SSATTMHSLLKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 258
           SS T  HS+   R+I+   S+ P++++   SF YNGL   H  A+     PD  G
Sbjct: 473 SSMTRNHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 448 ASGSGGWLKHDEG*PCIGLCGSG*P 374
           A GSGGW +  +G      CG+G P
Sbjct: 28  AEGSGGWRRRRDGHVARARCGAGEP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,498
Number of Sequences: 37544
Number of extensions: 280177
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)