Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O17
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   7.2  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   9.5  

>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 138 SSVSVANRAGKIVRDVMSKGEL 203
           S +++ NR GK+ + + SKG++
Sbjct: 235 SKIAIINREGKLTQSLQSKGDV 256


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +3

Query: 429 EDIVXWVDPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQPYYKNIVEGDKKIGRTI 608
           +D + W +    T EY    L+ V V  G+         + H+ +   I+E   +  +T+
Sbjct: 375 DDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSKTL 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,219
Number of Sequences: 5004
Number of extensions: 45910
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)