Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O17
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 41 2e-08
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 34 0.11
07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492... 30 1.4
07_03_0879 - 22256033-22256173,22256417-22256492,22256830-222572... 28 5.6
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 28 5.6
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 28 5.6
10_03_0023 - 7151465-7152111,7152222-7152405 28 7.5
01_06_1739 - 39573754-39574194,39574485-39574664 28 7.5
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 41.1 bits (92), Expect(2) = 2e-08
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 429 EDIVXWVDPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQP 560
+D VDPLDGT+ + GF V V IG+ V + P GV++ P
Sbjct: 81 DDPTWIVDPLDGTTNFVHGF-PFVCVSIGLTVGKIPTVGVVYNP 123
Score = 34.7 bits (76), Expect(2) = 2e-08
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 126 RLLASSVSVANRAGKIVRDVMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLK 305
+ LA +V A AG+I+R + + + KG+ D TE D++ + I L YP+ K
Sbjct: 5 QFLAVAVDAAKNAGEIIRKGFYQTK-NVEHKGQVDLVTETDKACEDLIFNHLRKHYPDHK 63
Query: 306 II 311
I
Sbjct: 64 FI 65
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 444 WV-DPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQPYYKNIVEGDKK 593
WV DP+DGT + G V + + VNE VAGV+ P + N +K
Sbjct: 194 WVLDPIDGTKGFLGGDDALYVVGLALVVNEKVVAGVMGCPNWSNATIASRK 244
>07_01_0658 +
4923205-4923334,4923448-4923526,4923629-4923723,
4923802-4923851,4924216-4924340,4924703-4924769,
4924871-4924960,4925281-4925392,4925597-4925667
Length = 272
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 432 DIVXWVDPLDGTSEYTQGFLEHVTVLIGIAVNETPVAGVIHQP 560
D V +DP+DGT + G T LI + PV G+I QP
Sbjct: 85 DYVWVLDPIDGTKSFITGKPLFGT-LISLLYKGKPVIGIIDQP 126
>07_03_0879 -
22256033-22256173,22256417-22256492,22256830-22257212,
22257924-22257983,22258073-22258303,22258475-22258562,
22259265-22259365,22259586-22259727,22259824-22259939
Length = 445
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 444 WV-DPLDGTSEYTQGFLEHVTVLIGIA--VNETPVAGVIHQPYYKNIVEGDKK 593
WV DP+DGT +++ ++ ++G+A VN VAGV+ P + + ++K
Sbjct: 226 WVLDPIDGTQGFSK--VDDTLYVVGLALVVNGKVVAGVMGSPNWASDTIANRK 276
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 655 GGAGVNPXTPTPCSPQIVLPIFLSPST 575
GG+ P P P Q VLP FL P++
Sbjct: 42 GGSAQRPLAPAPLVKQPVLPTFLVPTS 68
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 534 VSHSQLYQLVQSHVLRILEYILKFH 460
V + Y ++QS VL +LEYI K H
Sbjct: 500 VENGDRYNMLQSGVLELLEYIRKVH 524
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 655 GGAGVNPXTPTPCSPQIVLPIFLSPS 578
GG + P TP P +V P+F +PS
Sbjct: 183 GGVPIPPNPITPAPPSLVPPVFPTPS 208
>01_06_1739 - 39573754-39574194,39574485-39574664
Length = 206
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 105 GSVPLIVRLLASSVSVANRAGKIVRDVMSKG 197
GSVP V L+ SSVSV + + R+ +KG
Sbjct: 126 GSVPRRVHLVVSSVSVTRQDAALWRNATAKG 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,194
Number of Sequences: 37544
Number of extensions: 273470
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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