Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O17
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 125 NN*RNTTVHNY*LLLYFKNIIRN 57
           NN  N   +NY   LY+KN I N
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYIIN 353


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 122 C*VTSFVSISCQPSWENRSRCNEQRGTW 205
           C V S  S+SC PS ++ ++C     +W
Sbjct: 149 CLVFSSGSVSCVPSVKHVAKCATDFSSW 176


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 637 PXTPTPCSPQIVLPIFLSPSTIFL 566
           P T  P +PQ +   F+  ST+FL
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFL 336


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 644 GKSTYTHTMQSPN 606
           GK +Y HT+ SPN
Sbjct: 95  GKHSYLHTITSPN 107


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 125 NN*RNTTVHNY*LLLYFKNIIRN 57
           NN  N   +NY   LY+KN I N
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIIN 123


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 237 FDSRLYPFPLYQVP 196
           FD RL+ FP+  VP
Sbjct: 305 FDGRLFEFPIKFVP 318


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 216 KGKDDYQTEADRSAQRCIVASLAAQYPN 299
           KG+   +TE +RS +  I++S    Y N
Sbjct: 286 KGRSRDRTERERSKETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 216 KGKDDYQTEADRSAQRCIVASLAAQYPN 299
           KG+   +TE +RS +  I++S    Y N
Sbjct: 297 KGRSRDRTERERSKETKIISSNNYNYKN 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,497
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)