Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O15
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 115 3e-27
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 115 3e-27
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 41 1e-04
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 1.1
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 1.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.5
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 5.9
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 25 5.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 7.8
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 115 bits (277), Expect = 3e-27
Identities = 50/59 (84%), Positives = 53/59 (89%)
Frame = +2
Query: 302 PRWSGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGXPGIGATHSSRFIPLK 478
P GS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHG PGIGATHSSRFIPLK
Sbjct: 95 PEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153
Score = 82.2 bits (194), Expect = 4e-17
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +1
Query: 100 VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 279
V+L+QLLD+ EQL++L H GL ++KLR+AK EAP NEKP VKTH
Sbjct: 28 VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTH 87
Query: 280 LRNMIIVPEMVG 315
LRNMII+PEMVG
Sbjct: 88 LRNMIILPEMVG 99
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 57 LKKKRIFRKFTYRG 98
L+KKR FR F YRG
Sbjct: 14 LRKKRSFRTFAYRG 27
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 115 bits (277), Expect = 3e-27
Identities = 50/59 (84%), Positives = 53/59 (89%)
Frame = +2
Query: 302 PRWSGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGXPGIGATHSSRFIPLK 478
P GS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHG PGIGATHSSRFIPLK
Sbjct: 96 PEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
Score = 83.4 bits (197), Expect = 2e-17
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = +1
Query: 40 LRSTKPSRKSVFSGSSLTGAVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKK 219
+R + +K F + G V+L+QLLD+ EQL++L H GL ++K
Sbjct: 10 VRVAELRKKRTFRTFAYRG-VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRK 68
Query: 220 LRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVG 315
LR+AK EAP NEKP VKTHLRNMII+PEMVG
Sbjct: 69 LRKAKSEAPLNEKPATVKTHLRNMIILPEMVG 100
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 302 PRWSGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 415
PR G+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 61 PRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 471 GMNLELCVAPIPGXPCFTGLYVTENS 394
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 235 KEAPPNEKPEIVKTHLRNMIIVPEMVG 315
K A P++KP + THL +++I VG
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVG 86
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 335 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 421
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 317 NPTISGTMIMFLK*VFTISGFSFGGASFLARRSFL 213
NPT +G +I VFTI +FG F RR L
Sbjct: 372 NPTATGLIIAATNFVFTI--VAFGVIDFFGRRILL 404
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 462 LELCVAPIPGXPCFTGLYVTE 400
LELC PG P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 187 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 282
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,425
Number of Sequences: 5004
Number of extensions: 33366
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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