Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...   177   1e-45
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   2.4  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   2.4  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   5.5  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.5  

>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score =  177 bits (431), Expect = 1e-45
 Identities = 81/165 (49%), Positives = 116/165 (70%)
 Frame = +2

Query: 140 VGKSIPDWLSERKKRALLKKNVDLRRXIELIQEFDMPGVSTCLKVSKDGQYIMATGIYKP 319
           V + +P+W+S+RK    LKK+  L   IEL+Q+F+ P  S  +K ++DG+Y MATG+YKP
Sbjct: 21  VTQRLPNWISKRK----LKKDYALSHRIELLQDFEYPEASNRIKCTRDGKYAMATGVYKP 76

Query: 320 XIKCFDVNNLSLKFERCMDSEVIKFEILSEDYTKIVFLQCDRYVEFHVGHGRHYRLRVPR 499
            IK FD   +SLKFER  D+E ++FEILS+D+TK V LQ DR V+FH   G HY  R+P+
Sbjct: 77  HIKVFDFAEMSLKFERHTDAENVQFEILSDDWTKSVHLQTDRTVDFHSQGGIHYSTRIPK 136

Query: 500 FGRDIAYHKPSCDLFVVGNSSEIYRLNLEIGQFLAPYSTKATEMN 634
           +GRD+ YH P+CDL++     E+YRLNLE G+FL P   ++ +++
Sbjct: 137 YGRDLKYHYPNCDLYLAAAGDEVYRLNLEQGRFLNPLKIESAQID 181


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 221 IELIQEFDMPGVSTCLKVSKDGQYIMATG 307
           I L+   + P V  C+K S +G+Y +ATG
Sbjct: 304 INLVHTLEHPSVVCCVKFSNNGKY-LATG 331


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 MPGVSTCLKVSKDGQYIMATGIYKPXIKCFDVNNLSLKFER 367
           MPG ST  K +++G   M     KP ++      L L FER
Sbjct: 162 MPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFER 202


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 215 RXIELIQEFDMPGVSTCLKVSKDGQYIMATGIYKPXIKCFDVNNL 349
           R  +     ++P   TC+  SK    ++ T      + C+D+ NL
Sbjct: 178 RSSDKFMSIEIPNQITCMNWSKSNHRMVYTADNNNLVYCYDIANL 222


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 446 YVEFHVGHGRHYRLRVPRFGRDIAYHKPSCDLFVV-GNSSEIYRLNLE 586
           +++FH+    +    +P+F ++I  H    + FV  G   E   +NL+
Sbjct: 706 HLDFHIAGESYAGHYIPQFAKEIMEHNQGANFFVASGYEMEKQYINLK 753


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 194 KKNVDLRRXIELIQEFDMP--GVSTCLKVSKDGQYIMATG 307
           +K    +R +  I++  +P  G+S CL  S+DG Y+++ G
Sbjct: 279 QKGSRTKRPVMKIKDAHLPQQGIS-CLSFSQDGNYLLSRG 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,091
Number of Sequences: 5004
Number of extensions: 56606
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)