Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O10
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...   126   2e-29
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   4.3  
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975...    29   4.3  
01_02_0101 + 11127762-11128146,11128604-11128782,11129285-111293...    27   9.9  

>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score =  126 bits (303), Expect = 2e-29
 Identities = 66/174 (37%), Positives = 102/174 (58%)
 Frame = +2

Query: 122 KFTTLSVGKSIPDWLSERKKRALLKKNVDLRRXIELIQEFDMPGVSTCLKVSKDGQYIMA 301
           K  +++  + +  W+  +KKRAL +K+  +   + LI          C         +  
Sbjct: 19  KLYSITGNRYVAPWVLSKKKRAL-RKDAGILTRLTLI----------CSLYFGFFFLVQM 67

Query: 302 TGIYKPXIKCFDVNNLSLKFERCMDSEVIKFEILSEDYTKIVFLQCDRYVEFHVGHGRHY 481
           T IY P +K +++  LS+KFER M SE++ F++L +DY+K+ FL  DR V  H  +GRHY
Sbjct: 68  TCIYPPQVKVYELKELSMKFERHMISEIVDFQVLGDDYSKLAFLCADRSVCLHAKYGRHY 127

Query: 482 RLRVPRFGRDIAYHKPSCDLFVVGNSSEIYRLNLEIGQFLAPYSTKATEMNCCS 643
            LR+PR GRD+AY   SCDL    +S ++YR+NLE G+FLA  S+++  +N  S
Sbjct: 128 SLRIPRMGRDMAYDCWSCDLLCAASSPDVYRINLEQGRFLASLSSQSPAINVVS 181


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 251 GVSTCLKVSKDGQYIMATGIYKPXIKCFDVNN 346
           GV+  L  SKDG Y+   G   P I C+D+ N
Sbjct: 277 GVTQVL-FSKDGNYLYTGGRKDPYILCWDIRN 307


>03_02_0600 -
           9748382-9748933,9749805-9749840,9751164-9751218,
           9751588-9751697,9751955-9752602
          Length = 466

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 408 SLRISNLMTSESIHLSNFNDKLLTSKHLIXGL*IPVAIMYCP 283
           SL + N + S S +LS     +L  KH+I       ++ YCP
Sbjct: 376 SLMLCNALQSNSFNLSVMGGVILEIKHVIASCFHSFSVSYCP 417


>01_02_0101 +
           11127762-11128146,11128604-11128782,11129285-11129341,
           11129421-11129484,11130374-11130417,11130811-11130861
          Length = 259

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 460 CGSWPTL*TPSSTFRK 507
           CGSWP + +PSST R+
Sbjct: 54  CGSWPWIGSPSSTRRR 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,674,961
Number of Sequences: 37544
Number of extensions: 300592
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)