Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O06
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   157   3e-39
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    32   0.21 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  157 bits (381), Expect = 3e-39
 Identities = 71/95 (74%), Positives = 77/95 (81%)
 Frame = +1

Query: 46  KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 225
           KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + 
Sbjct: 4   KRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYA 63

Query: 226 LPKLYAKLHYCVSCAIHSKVVRNRSXKDRRIRTPP 330
           LPKLY KLHYC++CAIHSKVVRNRS + RR R PP
Sbjct: 64  LPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +1

Query: 43  AKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 222
           A +R      H   H+K ++C NC+     +K+++  +IR+  E A   ++  A      
Sbjct: 66  AYKRKKNLDAHMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICK 125

Query: 223 QL-PKLYAKLHYCVSCAIHSKVV-RNRSXKDRRIRTPPKS 336
           +L P    K H    C    K++ + R  K  ++++ P S
Sbjct: 126 ELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +1

Query: 43  AKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 222
           A +R      H   H+K ++C NC+     +K+++  +IR+  E A   ++  A      
Sbjct: 184 AYKRKKNLDAHMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICK 243

Query: 223 QL-PKLYAKLHYCVSCAIHSKVV-RNRSXKDRRIRTPPKS 336
           +L P    K H    C    K++ + R  K  ++++ P S
Sbjct: 244 ELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 282


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 252 LLRVMRHPQQSCQEQIEXRQKNPYSSQE*LP*GHVTSTGSAK 377
           ++ V + P +S   ++   QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 163 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSXK 306
           N++    +RD N   +   ++L  +   L YC+   +++  V NR  K
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRCVK 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,182,489
Number of Sequences: 27780
Number of extensions: 143676
Number of successful extensions: 318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)