Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O05
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 181 5e-46
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 180 8e-46
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.4
11_03_0171 + 11111534-11113207 28 5.4
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 28 7.1
03_02_0098 + 5608787-5610812,5610956-5611053 27 9.4
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 27 9.4
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.4
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 181 bits (440), Expect = 5e-46
Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 2/195 (1%)
Frame = +2
Query: 47 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRC 226
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 227 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPRRRNKSVESLQINVQRIKEYR 406
T++Y+ K RAGRGFTL E++AAG+ FA TIGI+V RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 407 ARLILFP-KGKKVLXGEANEXXRKLATQLRGPLMPVQQPAPKSV-ARPITEXEKNFKAYQ 580
A+L++FP + +KV G++ ATQ++G MP+ + +SV +T+ K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180
Query: 581 YLRGARSIAKLVGIR 625
LR R + +G R
Sbjct: 181 KLRVERMNQRHIGAR 195
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 180 bits (438), Expect = 8e-46
Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 2/195 (1%)
Frame = +2
Query: 47 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRC 226
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 227 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVXPRRRNKSVESLQINVQRIKEYR 406
T++Y+ K RAGRGFTL E++AAG+ +A TIGI+V RR+N+S+E LQ NVQR+K Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 407 ARLILFP-KGKKVLXGEANEXXRKLATQLRGPLMPVQQPAPKSV-ARPITEXEKNFKAYQ 580
A+L++FP + +KV G++ ATQ++G MP+ + +SV +T+ K FKAY
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYA 180
Query: 581 YLRGARSIAKLVGIR 625
LR R + VG R
Sbjct: 181 KLRVERMNQRHVGAR 195
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 123 TSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 293
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>11_03_0171 + 11111534-11113207
Length = 557
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +2
Query: 254 RAGRGFTLREIRAAGLNPVFARTIGIAVXPRRRNKSVESLQINVQRIKE---YRARLILF 424
+ G+G + + G PV R +G R K + + R++ R R +
Sbjct: 436 KGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYW 495
Query: 425 PKGKKVLXGEANEXXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNF 568
+K++ + LAT LRG P P+P + E F
Sbjct: 496 SADEKLVVTDFVNNGN-LATALRGEHTPSPSPSPSQFVNLFGKRETYF 542
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 202 PSCRTWSYGLSFLYXILLSAVSSSWLVKPSFNKSLPILV-EMSIRYHIIPLAHFDVGVLP 26
PS W++ + + LLS S++ + +S PI++ +++++ +P+ HF VLP
Sbjct: 35 PSLPVWTFRMWTIG--LLSCAMLSYINQFFSYRSEPIVITQITVQVAALPIGHFLARVLP 92
Query: 25 RQR 17
+++
Sbjct: 93 KRK 95
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 531 DLGAGC*TGINGPRSC---VASLRXXSLASPFSTFLPFGNSIR 412
D GAG G++G RSC V ++ ++A+P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 343 GXYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWA--SHYRT*RP 200
G Y + +G Y ++ GP+ T S SS + + +S A SH+R RP
Sbjct: 103 GNYYKPSLAGSYRARAPGPHATTSSSSECSSYGGFSSSEAESSHHRRLRP 152
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 217 YRT*RPSCRTWSYGLSF 167
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,798
Number of Sequences: 37544
Number of extensions: 317415
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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