Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O04
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 28 1.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 28 1.4
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 2.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.4
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 27 3.1
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 4.1
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 5.5
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.5
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 26 5.5
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 7.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 9.5
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 9.5
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -3
Query: 421 SSNATVSNYGTKSHCAAFRAILWVYFHLTKIIVGMVPISNYLFST 287
+ A + +Y + + A + AI W F+L +I +VP++ + S+
Sbjct: 168 AQGAVIMSYPREENKARYIAIFWGIFNLGAVIGSIVPLAQTMHSS 212
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 221 VILKYVSGYSQLCGNKTEKTLXCTKEIIGDWDHADYDLC 337
+I + +G+ G ++ L C EI G DH+ D C
Sbjct: 888 IIAEMYTGFPLFPGENEQEQLACIMEIFGPPDHSLIDKC 926
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 544 TKFHSSPLNVTESYVQYSFVDTHR 473
T H + ++ E+Y+ Y F D HR
Sbjct: 148 TNSHQNSYSLNETYLSYDFFDNHR 171
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 589 YVQTVVLHVAVFVLKTKFHSSPLNVTESY-VQYSFVDTHRSRLLIVGNGYDVRFQRY 422
++Q + +H FV+ T + VT + V YS+ H ++ +G G+DV ++R+
Sbjct: 1013 FIQFIRVH---FVILTPMPAVIFCVTAALTVTYSWKSNHEPGVVTLGIGWDVAYRRF 1066
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 456 WVTVMMCGFSVTPPMPLLATTGPKVIV 376
W T + GF +PLLA T PK ++
Sbjct: 205 WSTTIFSGFIFALSLPLLAETYPKTLL 231
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 451 NGYDVRFQRYSSNATVSNYGTKSHCAAFRAILWVYFHLTKIIVGMVPISNYLF 293
NGY + F+ ++ +G +C A+RA W+Y L ++ + + +L+
Sbjct: 152 NGYTLYFRPMVVSSFAHIFGHLLYCMAYRA-NWIYLILIGRMLNGIGFTTFLY 203
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 281 LXCTKEIIGDWDHADYDLCQMEVYPQNSPEC 373
L CT + WDH + + Q + Y EC
Sbjct: 127 LPCTPAELIPWDHGSFTMNQEDAYTGQHGEC 157
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 317 HADYDLCQMEVYPQN--SPECGTMTFGPVVANSGIGGVTLKPHIITVTHNEQTRPMRINK 490
+ D+D +V P + +PE M FG V N V T N ++ K
Sbjct: 70 YKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKNPPVNYSESEFTTLANNVANQNKLIK 129
Query: 491 TVLNITFSNIK 523
+ + + + N+K
Sbjct: 130 SFIGMGYYNVK 140
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 227 LKYVSGYSQLCGNKTEKTLXCTKEIIGDWDHADYDLC 337
+ YV+ Y+ C + E+ L CT+ I + D C
Sbjct: 81 IAYVNKYASGCFGRVERRLVCTRSISRHSNQKLLDFC 117
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 395 VVANSGIGGVTLKPHIITVTHNEQTRPMRINKTVLNITFSNIKWTTMK 538
VV NS LK + T+T R R+N T + +++K +T+K
Sbjct: 82 VVKNSDTDNGLLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLK 129
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/43 (23%), Positives = 19/43 (44%)
Frame = +2
Query: 185 DMFRLPYYVFTFVILKYVSGYSQLCGNKTEKTLXCTKEIIGDW 313
D++ P Y F + + VS + G ++ L C ++ W
Sbjct: 450 DLYMYPNYDFVTIYNQSVSAMNGWAGGVYQQALSCASQLNNSW 492
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 165 VQMIKTKLINNNSGWIF*HHCNELIKSPVLIKQENNKKIF 46
VQ + LI N G + H E+ S L+K + KI+
Sbjct: 84 VQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIY 123
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 542 RFQDKYRDMKNHCLNIVIS 598
R +D Y D++N CL I++S
Sbjct: 493 RLKDPYDDIRNLCLKILLS 511
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 422 VTLKPHIITVTHNEQTRPMRINKTVLNITFSNIKWTTM 535
VT PH++ + H + + + TF IKW ++
Sbjct: 282 VTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASL 319
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 538 FHSSPLNVTESYVQYSFVDTH 476
F S ++TE+YVQ S VD H
Sbjct: 36 FEESKGSITENYVQDSSVDEH 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,420
Number of Sequences: 5004
Number of extensions: 55336
Number of successful extensions: 149
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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