Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_O04
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1332 - 29403320-29407804 29 3.2
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529... 29 4.3
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 28 5.6
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 28 7.5
03_01_0506 + 3816676-3817971 28 7.5
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 9.9
10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175 27 9.9
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 27 9.9
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 380 MTFGPVVANSGIGGVTLKPHIITVTHNEQTRP----MRINKTVLNITFSNIKWTTMKFRF 547
+T P+V GIG TL HI HN + +N + + KW K +
Sbjct: 303 LTVIPIVGPGGIGKTTLTQHIYKEVHNHFDVKVWVCVSLNFNLYRLKEEISKWIP-KLKD 361
Query: 548 QDKYRDMKNHCLNIVISKDLTI 613
+KY DM + + SK L +
Sbjct: 362 DEKYVDMDDSIEQRLKSKKLLL 383
>01_04_0060 -
15552024-15552070,15552249-15552435,15552643-15552930,
15553027-15553221,15553330-15553431,15553588-15553842,
15553936-15553995
Length = 377
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = -3
Query: 598 RDDYVQTVVLHVAVFVLKTKFHSSPLNVTESYVQYSFVDTHRSRLLIVGNGYDVRFQRYS 419
++D+++ V +VL K+ + + ++S VQY TH + ++I +G + S
Sbjct: 261 KEDHIKPTDAVVKFYVLYEKWRRAEVPKSDSVVQYFKNITHANGVIIQPSGLECSLHA-S 319
Query: 418 SNATVSNYGTK 386
+A S YG K
Sbjct: 320 VDALSSCYGEK 330
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 392 PVVANSGIGGVTLKPHIITVTHNEQTRPMRINKTVL 499
PVVA + IG + + HII++T PM + +L
Sbjct: 426 PVVARASIGSLLILSHIISLTSMSLNAPMLFPEALL 461
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 230 KYVSGYSQLCGNKTEKTLXCTKEIIGDWDHADYDLCQMEVYPQNSPECG---TMTFGPVV 400
KY+S Q CG + +T+ T + GD D +C + + + G T + P
Sbjct: 334 KYISAKMQACGKYSNRTVTSTIFLSGDLD----SVCPLTATRYSVGDLGLAVTEPWRPWT 389
Query: 401 ANSGIGG 421
AN +GG
Sbjct: 390 ANREVGG 396
>03_01_0506 + 3816676-3817971
Length = 431
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 404 NSGIGGVTLKPHIITVTHNEQTRPMRINKTVLNITFSNIKWTTM 535
+ G+ GVT P +I V +NE K V N KW T+
Sbjct: 316 SEGLNGVTGAPPLIAVVNNELYAADYSEKDVKKYDKQNNKWITL 359
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 467 TRPMRINKTVLNITFSNIKWTTMKFRFQDKYRDMKNHCLNIVISKDLTIDDQSVLYY 637
T+P+ + K V +++K++ K+ QDK RD+ + N + S+ I D+ + +Y
Sbjct: 83 TKPVEL-KIVAKEFENSLKYSGYKYIHQDKLRDIADEYNNSMKSEWPKIRDKELYFY 138
>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
Length = 458
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 467 TRPMRINKTVLNITFSNIKWTTMKFRFQDKYRDMKNHCLNIVISKDLTIDDQSVLYY 637
T+P+ + K V +++K++ K+ QDK RD+ + N + S+ I D+ + +Y
Sbjct: 83 TKPVEL-KIVAKEFENSLKYSGYKYIHQDKLRDIADEYNNSMKSEWPKIRDKELYFY 138
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 467 TRPMRINKTVLNITFSNIKWTTMKFRFQDKYRDMKNHCLNIVISKDLTIDDQSVLYY 637
T+P+ + K V +++K++ K+ QDK RD+ + N + S+ I D+ + +Y
Sbjct: 83 TKPVEL-KIVAKEFENSLKYSGYKYIHQDKLRDIADEYNNSMKSEWPKIRDKELYFY 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,207
Number of Sequences: 37544
Number of extensions: 314091
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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