Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O04
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin fam...    32   0.31 
Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z75954-4|CAB00109.1|  273|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin family
           protein 19 protein.
          Length = 452

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = -1

Query: 612 IVRSFEMTMFRQWFFMSRYLS*KRNFIVVHLMLLKVMFNTVLLIRIGLVCSLWVTVMMCG 433
           IV  +EM +  QW +M+ YLS KR  +V+  M +   F    L+R   VC+L + +++  
Sbjct: 36  IVALYEMLIHGQWKYMANYLSKKRTQLVLG-MYIGAAFE---LVR--FVCALVIAIVLIL 89

Query: 432 FSVTPPMPL 406
             ++  +PL
Sbjct: 90  LRMSVLLPL 98


>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +2

Query: 311 WDHADYDLCQMEVYPQNSPECGTMTFGPVVANSGIGGVTLKPHIITVTHNEQTRPMRINK 490
           +D     L  M+   +N+P   T + GP V+ S I G+TL P      H+  T  + INK
Sbjct: 5   YDVKGLGLSSMDTNIRNAPSVITSSPGPSVSISLISGLTLLPTSCPQCHSLHT--LDINK 62

Query: 491 TVLNITFSN 517
            + +I+  N
Sbjct: 63  LMSSISSLN 71


>Z75954-4|CAB00109.1|  273|Caenorhabditis elegans Hypothetical
           protein F58H1.6 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 510 KVMFNTVLLIRIGLVCSLWVTVMMCGFSVTPPMPLLATT 394
           +V+   +L+ R   +C LW T  +C + V  P+ +  TT
Sbjct: 30  RVLNPGMLIERFECMCDLWHTGQLCQYDVPLPIAITITT 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,963
Number of Sequences: 27780
Number of extensions: 305260
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)