Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_O04
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.0  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 266 KTEKTLXCTKEIIGDWDHADYD 331
           K+ K L  +  +I +W + DYD
Sbjct: 26  KSSKNLEHSMNVIHEWKYIDYD 47


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 263 NKTEKTLXCTKEIIGDWDHADYD 331
           N + K L  T  +I  W + DYD
Sbjct: 26  NSSGKNLTNTLNVIHKWKYLDYD 48


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 266 KTEKTLXCTKEIIGDWDHADYD 331
           K+   L  + ++I +W H D+D
Sbjct: 28  KSANNLAHSMKVIYEWKHIDFD 49


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 502 VQYSFVDTHRSRLLIVGNGYDVRFQRYSSNATVSNYG 392
           +QY  +D     + I   GY +R  RY  NA + + G
Sbjct: 142 LQYFPMDRQLCHIEIESFGYTMRDIRYKWNAGLQSVG 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,085
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)