Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N24
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 152 3e-38
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 152 3e-38
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 48 1e-06
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 30 0.29
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.7
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.1
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 152 bits (369), Expect = 3e-38
Identities = 73/113 (64%), Positives = 89/113 (78%), Gaps = 4/113 (3%)
Frame = +1
Query: 100 AVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKVMP 267
A++NCADN+G K SV RL+++ C G M++ATVKKGKP+LRKK+MP
Sbjct: 23 AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASC-----GDMVLATVKKGKPDLRKKIMP 77
Query: 268 AVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
A+V+RQRK +RR+DG ++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 78 AIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 152 bits (369), Expect = 3e-38
Identities = 73/113 (64%), Positives = 89/113 (78%), Gaps = 4/113 (3%)
Frame = +1
Query: 100 AVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKVMP 267
A++NCADN+G K SV RL+++ C G M++ATVKKGKP+LRKK+MP
Sbjct: 23 AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASC-----GDMVLATVKKGKPDLRKKIMP 77
Query: 268 AVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
A+V+RQRK +RR+DG ++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 78 AIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +1
Query: 94 LGAVINCADNTGRKESVCDRSPRLSKVA*T--DCRRPVPGHMIVATVKKGKPELRKKVMP 267
L ++ DN+G + C R R K A + V ++V R +
Sbjct: 4 LKGILKVIDNSGATLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHH 63
Query: 268 AVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 405
A+++R + P RR DG ++ F+DNA V+VN + E G+ I VA E
Sbjct: 64 AIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 29.9 bits (64), Expect = 0.29
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 100 AVINC--ADNTGRKESVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKV 261
+ I C A+N G +SV + SP + C R +P H +V T G PE+ K V
Sbjct: 68 SAITCLVAENAGGVDSVEEMSPAFVESQIDCCIRDIPCH-VVKTGMLGSPEIVKAV 122
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 497 PSTSKSNPK-NYNLRNRHLQCKCAXLKYTF 583
P+T+ SN N+ +RNR +C+ L TF
Sbjct: 11 PTTATSNSSLNFFVRNREKSIRCSSLHQTF 40
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 419 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINXPSRLLNGFRCLMTTA 267
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 377 EPFISPLLLTMTPALSSKYINXPS 306
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 214 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGXFIYFEDNAGV 345
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,383
Number of Sequences: 5004
Number of extensions: 44903
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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