Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N24
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 150 7e-37
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 150 7e-37
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 150 7e-37
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 59 2e-09
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 30 1.6
03_05_0291 - 22837412-22838128 29 2.1
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 29 2.7
08_02_1198 + 25204896-25206755 29 3.6
07_03_1014 + 23304245-23304465,23304560-23304597,23304691-233049... 29 3.6
04_04_1074 + 30628192-30628456,30628924-30629144 29 3.6
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 3.6
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 4.8
09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880 28 6.3
03_05_0482 + 24802073-24802636,24802727-24803026,24803159-248032... 27 8.3
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 150 bits (364), Expect = 7e-37
Identities = 74/115 (64%), Positives = 90/115 (78%), Gaps = 4/115 (3%)
Frame = +1
Query: 94 LGAVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKV 261
+ A +NCADNTG K SV RL+++ + C G M++ATVKKGKP+LRKKV
Sbjct: 22 VAATVNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKV 76
Query: 262 MPAVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
MPAV++RQRKP+RR+DG ++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 77 MPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 150 bits (364), Expect = 7e-37
Identities = 74/115 (64%), Positives = 90/115 (78%), Gaps = 4/115 (3%)
Frame = +1
Query: 94 LGAVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKV 261
+ A +NCADNTG K SV RL+++ + C G M++ATVKKGKP+LRKKV
Sbjct: 22 VAATVNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKV 76
Query: 262 MPAVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
MPAV++RQRKP+RR+DG ++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 77 MPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 150 bits (364), Expect = 7e-37
Identities = 74/115 (64%), Positives = 90/115 (78%), Gaps = 4/115 (3%)
Frame = +1
Query: 94 LGAVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKV 261
+ A +NCADNTG K SV RL+++ + C G M++ATVKKGKP+LRKKV
Sbjct: 39 VAATVNCADNTGAKNLYIISVKGIKGRLNRLP-SAC----VGDMVMATVKKGKPDLRKKV 93
Query: 262 MPAVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
MPAV++RQRKP+RR+DG ++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 94 MPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Frame = +1
Query: 91 QLGAVINCADNTGRKESVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKK---V 261
Q+ + DN+G K +C +S R K A G I+ +VK+ +P + K V
Sbjct: 53 QMRTNLKVVDNSGAKRVMCIQSLRGKKGARL-------GDTIIGSVKEAQPRGKVKKGDV 105
Query: 262 MPAVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 405
+ VV+R R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 106 VYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = -2
Query: 269 AGITFFRSSGLPFLTVATIMCPGTGRRQSVQATFDSLGLRSHTDSLRPVLSAQLITAPSW 90
AGI +S G+ + + T GRR+++QA LRS+ D+L + + +L+TA S
Sbjct: 224 AGIA--KSMGILTVGIVTTPFAFEGRRRALQAQEGIASLRSNVDTLIVIPNDKLLTAVSP 281
Query: 89 ET 84
T
Sbjct: 282 NT 283
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 440 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 327
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +2
Query: 482 VLLSFPSTSKSNPKNYNLRNRHL 550
VLLSFPS K +P+N NL R L
Sbjct: 261 VLLSFPSEIKVHPENLNLAARSL 283
>08_02_1198 + 25204896-25206755
Length = 619
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 45 WWFXRERNSXISLGLPAGSSNQLRRQHRAQRI 140
WW + ISLGLP G S R+ H +++
Sbjct: 205 WWPSGNEDWWISLGLPMGISPPYRKPHDLKKV 236
>07_03_1014 +
23304245-23304465,23304560-23304597,23304691-23304994,
23305104-23305314,23305529-23305546
Length = 263
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 170 FDSLGLRSHTDSLRPVLSAQLITAPSWETQGDTGISLP 57
FD LGL S +SLR + A+L+ W G GI +P
Sbjct: 81 FDPLGLGSDPESLRWNVQAELVHC-RWAMLGAAGIFIP 117
>04_04_1074 + 30628192-30628456,30628924-30629144
Length = 161
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 90 PAGSSNQLRRQHRAQR-ICM*SQSKAIKGRLNRL-PAAGSGAHD 215
PA + +LRRQH QR +C + L L PAAGS AHD
Sbjct: 11 PASARLKLRRQHDQQREVCDALPVPHLLQSLLLLGPAAGSAAHD 54
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 345 DTRIVLKVYKXSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 208
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 328 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 414
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880
Length = 102
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 226 LWPQSCAPEPAAGSLFRRPLI 164
LWP SC+ P S FR +I
Sbjct: 51 LWPASCSSSPKVASTFREDII 71
>03_05_0482 +
24802073-24802636,24802727-24803026,24803159-24803249,
24803750-24803874,24804881-24804973,24805252-24805317,
24805394-24805510
Length = 451
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 248 SSGLPFLTVATIMCPGT--GRRQSVQATFDSLGLRSHTDSLRPVLSAQLITAPSWET 84
+ + LTV + P + GRR++VQA LR+ D+L + + +L++A S T
Sbjct: 207 AKSMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRNSVDTLIVIPNDKLLSAVSPNT 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,538
Number of Sequences: 37544
Number of extensions: 334363
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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