Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N24
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   151   3e-37
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    29   1.8  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  151 bits (367), Expect = 3e-37
 Identities = 79/115 (68%), Positives = 87/115 (75%), Gaps = 4/115 (3%)
 Frame = +1

Query: 94  LGAVINCADNTGRKE----SVCDRSPRLSKVA*TDCRRPVPGHMIVATVKKGKPELRKKV 261
           +GAV+NCADNTG K     SV     RL+++          G M V +VKKGKPELRKKV
Sbjct: 22  VGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGV-----GDMFVCSVKKGKPELRKKV 76

Query: 262 MPAVVIRQRKPFRRRDGXFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 426
           +  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 77  LQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 452 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAXLKYT 580
           LE  F +++      PSTS S+P N N R R L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 452 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAXLKYT 580
           LE  F +++      PSTS S+P N N R R L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 483 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 352
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical
           protein F53H4.5 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 200 TGRRQSVQATFDSLGLRSHTDSLRPVLSAQLITAPSWETQGDTG 69
           +GRR+S         + SH  S  P  S  L T P  ETQ   G
Sbjct: 91  SGRRRSSTTKLIPQNMFSHIPSAFPNASTSLFTVPKKETQMPEG 134


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 464 FKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAXLKYT 580
           F +++      PSTS S+P N N R R L +C      YT
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,096
Number of Sequences: 27780
Number of extensions: 265710
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)