Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N24
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.72 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.72 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.72 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   2.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 432 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 554
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 432 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 554
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 432 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 554
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 458 YTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCAXLK 574
           YT  +++ ++L  P T  +   +  LRN      CA +K
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVK 692


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 147 TYRFFAPCVVGAVDY 103
           T RF+  CVV A DY
Sbjct: 467 TTRFYTACVVEAFDY 481


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -1

Query: 276 DHCRHYLFPEFRFTLFDCGHNHVP 205
           D C  Y +    +T  DCG    P
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWP 494


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 84  PGRYXNFAPAGTTT 43
           PG    FAPAG TT
Sbjct: 217 PGMVVTFAPAGLTT 230


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 84  PGRYXNFAPAGTTT 43
           PG    FAPAG TT
Sbjct: 274 PGMVVTFAPAGLTT 287


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 53  PAGAKFXYLPGSPSWEQ*STAPTTQGAKN 139
           P G      P SPS    S +PT+ G++N
Sbjct: 84  PGGGSSSPSPSSPSSFFSSVSPTSLGSEN 112


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -1

Query: 276 DHCRHYLFPEFRFTLFDCGHNHVP 205
           D C  Y +    +T  DCG    P
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,253
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)