Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N19
(540 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 125 6e-28
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 119 4e-26
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 99 6e-20
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 98 1e-19
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 86 6e-16
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 83 3e-15
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 72 7e-12
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 68 1e-10
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 66 6e-10
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 62 8e-09
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 60 3e-08
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 59 6e-08
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 55 1e-06
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 52 8e-06
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 51 1e-05
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 48 1e-04
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 46 7e-04
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 40 0.028
UniRef50_Q71RD7 Cluster: PP10897; n=1; Homo sapiens|Rep: PP10897... 33 5.6
UniRef50_A0B9D4 Cluster: Arginine decarboxylase; n=1; Methanosae... 32 7.3
UniRef50_Q64HK2 Cluster: Blue light regulator 2; n=1; Trichoderm... 32 9.7
UniRef50_A7FA74 Cluster: Putative uncharacterized protein; n=2; ... 32 9.7
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 125 bits (302), Expect = 6e-28
Identities = 73/146 (50%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +3
Query: 84 GKGISQSALPYXRRCP-YLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS 260
GKG+SQSALPY R P +L+ + + L ++ P ++ + +
Sbjct: 8 GKGLSQSALPYRRSVPTWLKLTSDDV--KEQIYKLAKKGLTPSQIGVILRDSHGVAQVRF 65
Query: 261 *LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXX 440
+ I+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KF
Sbjct: 66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRL 125
Query: 441 ARYYKTXSVLPPNWKYESSTASALVA 518
ARYYKT VLPPNWKYESSTASALVA
Sbjct: 126 ARYYKTKRVLPPNWKYESSTASALVA 151
Score = 106 bits (254), Expect = 4e-22
Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
MGRMHAPG G +AL + S+P LKLT+DDVKEQIYKL KKGLTPSQIGV+LRDSH
Sbjct: 1 MGRMHAPGKGLSQ--SALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSH 58
Query: 239 GVAQVRFVTGKKILR 283
GVAQVRFVTG KILR
Sbjct: 59 GVAQVRFVTGNKILR 73
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 119 bits (287), Expect = 4e-26
Identities = 70/146 (47%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Frame = +3
Query: 84 GKGISQSALPYXRRCP-YLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS 260
GKGIS SALPY R P +L+ P ++ P ++ +P+ S
Sbjct: 8 GKGISASALPYKRSSPSWLKTT--PQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKS 65
Query: 261 *LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXX 440
+ I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKF
Sbjct: 66 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 125
Query: 441 ARYYKTXSVLPPNWKYESSTASALVA 518
ARYYK LPP WKYES+TAS LVA
Sbjct: 126 ARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 79.4 bits (187), Expect = 5e-14
Identities = 45/75 (60%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
MGRMH+ G G +AL + S P+ LK T DV E I K KKGLTPSQIGV+LRDSH
Sbjct: 1 MGRMHSRGKGIS--ASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSH 58
Query: 239 GVAQVRFVTGKKILR 283
G+ QV+ VTG KILR
Sbjct: 59 GIPQVKSVTGSKILR 73
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 99.1 bits (236), Expect = 6e-20
Identities = 48/73 (65%), Positives = 55/73 (75%)
Frame = +3
Query: 300 GLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXSVLPPN 479
GLA DLP DLY+LIKKAVA++KHLERNRKDKD+KF ARY KT +LPP+
Sbjct: 59 GLALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTESRIHPLARYCKTKRMLPPS 118
Query: 480 WKYESSTASALVA 518
WKYES +ASALVA
Sbjct: 119 WKYESPSASALVA 131
Score = 66.9 bits (156), Expect = 3e-10
Identities = 37/62 (59%), Positives = 41/62 (66%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPALKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 241
MG MHAP L L LK T+DD+KEQIYKL KKGLTPSQIGV LRD+HG
Sbjct: 1 MGAMHAPRKA-LSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHG 59
Query: 242 VA 247
+A
Sbjct: 60 LA 61
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 98.3 bits (234), Expect = 1e-19
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = +3
Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
I+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+ ARYYK
Sbjct: 74 ILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVESRIHRLARYYKRVK 133
Query: 465 VLPPNWKYESSTASALVA 518
LPP WKYESSTASA+VA
Sbjct: 134 QLPPTWKYESSTASAMVA 151
Score = 61.3 bits (142), Expect = 1e-08
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
M RMH G G +AL + + PA LK+ + +V + + K +KG+ PSQIG+ LRDS
Sbjct: 1 MVRMHGNGRG--KASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSM 58
Query: 239 GVAQVRFVTGKKILR 283
G+AQV+ VTG+KILR
Sbjct: 59 GIAQVKNVTGRKILR 73
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 85.8 bits (203), Expect = 6e-16
Identities = 47/137 (34%), Positives = 74/137 (54%)
Frame = +3
Query: 87 KGISQSALPYXRRCPYLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS*L 266
KGI+ S +P+ R P + + NL ++ +P ++ +P +
Sbjct: 6 KGIASSLIPFERNAPLWVKDSKEKI-NEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIA 64
Query: 267 AKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXAR 446
+ I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKF +R
Sbjct: 65 GRNIVKILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSR 124
Query: 447 YYKTXSVLPPNWKYESS 497
YYK +P NW+++SS
Sbjct: 125 YYKRIQRIPINWRFDSS 141
Score = 44.8 bits (101), Expect = 0.001
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +2
Query: 140 LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 283
+K + + + E I L KKGL PSQIG LRDS G+ V+ + G+ I++
Sbjct: 23 VKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAGRNIVK 70
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 83.4 bits (197), Expect = 3e-15
Identities = 38/61 (62%), Positives = 43/61 (70%)
Frame = +3
Query: 303 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXSVLPPNW 482
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKF ARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 483 K 485
K
Sbjct: 129 K 129
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 72.1 bits (169), Expect = 7e-12
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 270 KRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARY 449
K+ S IMK GL P +PEDL L+++AV +RKHLE++ KD SK +Y
Sbjct: 69 KKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKY 128
Query: 450 YKTXSVLPPNWKYESSTASALV 515
YK+ VLP +W+Y TA LV
Sbjct: 129 YKSKGVLPADWRYTPETARLLV 150
Score = 49.6 bits (113), Expect = 5e-05
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
M RMHA G G+ + +P ++ T + V++ + +L KKG +QIG++LRD++
Sbjct: 1 MARMHARKRGRS--GSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTY 58
Query: 239 GVAQVRFVTGKKI 277
G+ V+ +TGKKI
Sbjct: 59 GIPDVKLITGKKI 71
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
I++ GLAP++PEDL +LIK+AV +RKHLE++ KD S +YYK
Sbjct: 81 ILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKG 140
Query: 465 VLPPNWKYESSTASALV 515
LP +W+Y+ A LV
Sbjct: 141 KLPKDWRYDPEQAKLLV 157
Score = 41.5 bits (93), Expect = 0.012
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
M RMHA G G+ P+ + P L+ T +D++ + KL K+G + + IG +LRD +
Sbjct: 1 MARMHARKRG--KSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQY 58
Query: 239 GVAQVR 256
G+ V+
Sbjct: 59 GIPTVK 64
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 65.7 bits (153), Expect = 6e-10
Identities = 38/61 (62%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 AANMGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLR 229
AA GR+H PG G +AL S+P LKLT+D+VKEQIYKL KKGLTP QIGV+LR
Sbjct: 211 AAITGRIHVPGKGLSR--SALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILR 268
Query: 230 D 232
D
Sbjct: 269 D 269
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 62.1 bits (144), Expect = 8e-09
Identities = 29/80 (36%), Positives = 41/80 (51%)
Frame = +3
Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
+ K ++ GL PD+P DL YL+K+A + KH+E N +D +K A
Sbjct: 69 IGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLA 128
Query: 444 RYYKTXSVLPPNWKYESSTA 503
+YYK VLP +WKY A
Sbjct: 129 KYYKRKGVLPKDWKYSIEIA 148
Score = 41.1 bits (92), Expect = 0.016
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2
Query: 161 VKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRYHE 292
V+ +I +L K+G +P+ IG++LRD +G+ VR GK + + E
Sbjct: 35 VENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLE 78
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 60.1 bits (139), Expect = 3e-08
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +3
Query: 279 SAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKT 458
S I++ GL P +PEDL+YLIKKA ++ HL + D +++ +RYYK
Sbjct: 73 SKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIESHIYRLSRYYKR 132
Query: 459 XSVLPPNWKYESS 497
LP NWKY S+
Sbjct: 133 IFRLPKNWKYISN 145
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 59.3 bits (137), Expect = 6e-08
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 270 KRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARY 449
K+ I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ + Y
Sbjct: 69 KKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSY 128
Query: 450 YKTXSVLPPNWKY 488
YK VLP +WKY
Sbjct: 129 YKEKGVLPADWKY 141
Score = 44.8 bits (101), Expect = 0.001
Identities = 18/44 (40%), Positives = 33/44 (75%)
Frame = +2
Query: 146 LTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 277
++ ++V++++ +L +G PS IG++LRD +G+ V+ VTGKKI
Sbjct: 28 MSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKI 71
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +3
Query: 270 KRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARY 449
K + IM+ G P+LPEDL +++KAV +++HL N+ D+ + Y
Sbjct: 68 KSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVY 127
Query: 450 YKTXSVLPPNWKYESSTA 503
YK +P +WKY+S A
Sbjct: 128 YKRIGRIPKDWKYKSVVA 145
Score = 45.2 bits (102), Expect = 0.001
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPALKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 241
MGR+H+ G P+ P+ +V++ I K K+GL PSQIG LRD H
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKA--PSWIQGPGEVEDLIVKYAKEGLAPSQIGSKLRDQHA 58
Query: 242 VAQVRFVTGKKILRYHE 292
+ R +TGK + + E
Sbjct: 59 IPLTRPITGKSVTQIME 75
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 52.0 bits (119), Expect = 8e-06
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +3
Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
L + + ++ G+ P +P DL L+ +A +R HL RKD +K+ A
Sbjct: 67 LGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVA 126
Query: 444 RYYKTXSVLPPNWK 485
RYYK +P NWK
Sbjct: 127 RYYKRKMRIPGNWK 140
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
M +MH+ G G G+ + P L + D++K + ++G KG+ IG LRD +
Sbjct: 1 MAKMHSSGKGRS--GSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEY 58
Query: 239 GVAQVRFVTGKKILRY 286
G+ + V G+ I R+
Sbjct: 59 GIGKASDVLGESITRF 74
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 51.2 bits (117), Expect = 1e-05
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 270 KRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARY 449
K I++ L ++PEDL ++KKAV +++HL+ N+ D+ + + Y
Sbjct: 69 KTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVY 128
Query: 450 YKTXSVLPPNWKYESSTA 503
YK +P WKY+S A
Sbjct: 129 YKKIGRIPATWKYKSVVA 146
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 158 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 277
+++E + K K GLTPSQIG+ LRD H + ++ +T K I
Sbjct: 32 EIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTI 71
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = +3
Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
++K L D+PEDL LI++ KHL N+ D ++K RYYK S
Sbjct: 74 VLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTS 133
Query: 465 VLPPNWKYE 491
LP +W E
Sbjct: 134 RLPQDWSLE 142
Score = 39.9 bits (89), Expect = 0.037
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 140 LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 277
++ + D++KE I K+ K+G+T S IG+ LRD + + R V K+
Sbjct: 26 IQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKL 71
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 45.6 bits (103), Expect = 7e-04
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +3
Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
L KR A++ + PEDL L+++AVA+ +HL N +D +K
Sbjct: 67 LGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLG 126
Query: 444 RYYKTXSVLPPNWKYESSTASALV 515
YYK L +W+Y+ +V
Sbjct: 127 NYYKAEGRLDSDWRYKRDQLRLIV 150
Score = 40.7 bits (91), Expect = 0.021
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 152 ADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 277
A +++ I + K G++ +QIG +LRD H V VR V GK+I
Sbjct: 30 AKEIESLILQYFKDGMSTAQIGTILRDKHAVPNVRLVLGKRI 71
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 40.3 bits (90), Expect = 0.028
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 270 KRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARY 449
K+ + I++ PDLPEDL L+++AV +R H++ N D +K Y
Sbjct: 73 KKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDY 132
Query: 450 YKTXSVLPPNWKYESSTA 503
Y+ V N+ Y A
Sbjct: 133 YRGDEV-DENFTYSYDNA 149
>UniRef50_Q71RD7 Cluster: PP10897; n=1; Homo sapiens|Rep: PP10897 -
Homo sapiens (Human)
Length = 189
Score = 32.7 bits (71), Expect = 5.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 182 VCKFVPLHRRQSISTQVGTPAAVRQRRLGDTLTQERAYDPCLRLFT 45
VC + H T + P + RQ LG T Q+ DPC LF+
Sbjct: 43 VCVYTHTHTHTHTHTHICLPPSPRQTCLGSTPPQQELEDPCPVLFS 88
>UniRef50_A0B9D4 Cluster: Arginine decarboxylase; n=1; Methanosaeta
thermophila PT|Rep: Arginine decarboxylase -
Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 643
Score = 32.3 bits (70), Expect = 7.3
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -2
Query: 287 DSGGSFCQLRILLGQLHVNPSALHQFVRE*DPSFQVCKFVPLHRRQSISTQVGTPAAV 114
D+ F +L+ L+GQ ++ +L Q V + Q+ +PLHR + + ++ GT A +
Sbjct: 435 DNSEEFRELKKLVGQKYIGNFSLFQSVPDMWGVGQIFPIMPLHRLREVPSECGTIADI 492
>UniRef50_Q64HK2 Cluster: Blue light regulator 2; n=1; Trichoderma
atroviride|Rep: Blue light regulator 2 - Trichoderma
atroviride (Hypocrea atroviridis)
Length = 484
Score = 31.9 bits (69), Expect = 9.7
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 142 EIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPPLS 288
E C C + W++G + CNA G W+ K RN PLS
Sbjct: 427 EYVCTDCGTLDSPEWRKGPNGPKTLCNACGLRWAKKEKKRNNSIGTPLS 475
>UniRef50_A7FA74 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1159
Score = 31.9 bits (69), Expect = 9.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 127 VPTCVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 243
+P V+ DC C N W+ G + CN+ G W+
Sbjct: 930 LPGNVQRDCANCHTKNTPEWRRGPSGNRDLCNSCGLRWA 968
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,103,557
Number of Sequences: 1657284
Number of extensions: 9321223
Number of successful extensions: 22985
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22973
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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