Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N19
         (540 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.2  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 302 THCLHDSGGSFCQLRILLG 246
           T CL + GG+  QL  LLG
Sbjct: 96  TFCLQEEGGTTSQLIELLG 114


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 277 DLFASYESYLGNSM*IPQHYTN 212
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 277 DLFASYESYLGNSM*IPQHYTN 212
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 277 DLFASYESYLGNSM*IPQHYTN 212
           D + +Y S + N+  +P HY+N
Sbjct: 20  DNYYNYTSDIPNAQQMPPHYSN 41


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 105 PTGRYPYP 82
           P G+YPYP
Sbjct: 168 PAGQYPYP 175


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 105 PTGRYPYP 82
           P G+YPYP
Sbjct: 60  PAGQYPYP 67


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 97  EIPLPRSVHTTHVCGFLLNRRSDXRQQEK 11
           E+ L  ++  + V  +  NRR+  RQQ+K
Sbjct: 101 EVALKINLPESRVQVWFKNRRAKCRQQQK 129


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 299 HCLHDSGGSFCQLRI 255
           HC     GS+CQ  I
Sbjct: 171 HCSDGYSGSYCQTEI 185


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 226 QHYTNL*GSETLLS 185
           QHYTN+   E ++S
Sbjct: 502 QHYTNIISQEQIIS 515


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,123
Number of Sequences: 336
Number of extensions: 2246
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)