Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N19
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   113   2e-26
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    27   1.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   5.4  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   9.5  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   9.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  113 bits (271), Expect = 2e-26
 Identities = 66/145 (45%), Positives = 84/145 (57%)
 Frame = +3

Query: 84  GKGISQSALPYXRRCPYLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS* 263
           GKGI+ SALPY R  P        ++   +     ++   P ++         +P+    
Sbjct: 8   GKGIASSALPYVRSPPAWCKADADSV-VEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFI 66

Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
             ++   I+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKF            A
Sbjct: 67  TGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLA 126

Query: 444 RYYKTXSVLPPNWKYESSTASALVA 518
           RYY+    LPP WKYES+TASALVA
Sbjct: 127 RYYRKVGALPPTWKYESATASALVA 151



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
 Frame = +2

Query: 62  MGRMHAPG*GYLPVGAALXPQVSLPAL--KLTADDVKEQIYKLGKKGLTPSQIGVMLRDS 235
           MGRMH+ G G   + ++  P V  P    K  AD V EQI K  KKG++PSQIGV LRDS
Sbjct: 1   MGRMHSKGKG---IASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDS 57

Query: 236 HGVAQVRFVTGKKILR 283
           HG+ QVRF+TG+KI+R
Sbjct: 58  HGIPQVRFITGQKIMR 73


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 94  IPLPRSVHTTHVCGFLLNRRSDXRQQEK 11
           I LP S    H+C FLL  +   RQ +K
Sbjct: 288 ITLPLSAIAKHICQFLLRTKGKWRQAKK 315


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 243 TPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNAGRDTC 121
           T C     TP+C G   +  +  I  FT + +N    R+ C
Sbjct: 804 TGCYQTGFTPVCIGASLYCNNAMIGPFTKTGLNIYDIREEC 844


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 92  YLPVGAALXPQV-SLPALKLTADDVKEQIYKLGKKGLTPSQI 214
           Y+P    +   + ++PA+K  A+    Q+  +G + LTP+ +
Sbjct: 60  YIPGSVGIEKLIEAVPAIKAIANINGVQVTNMGSENLTPADV 101


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 119 PQVSLPALKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGK 271
           PQ + PALK+T       + ++G +   P  I  + +D   ++ + FV  +
Sbjct: 220 PQWASPALKMTNGVGYHHVIEVGGEKTLPQSIACLAKDGM-ISMIGFVASE 269


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 92  YLPVGAALXPQV-SLPALKLTADDVKEQIYKLGKKGLTPSQI 214
           Y+P    +   + ++PA+K  A+    Q+  +G + LTP+ +
Sbjct: 60  YIPGSVGIEKLIEAVPAIKAIANINGVQVTNMGSENLTPADV 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,328
Number of Sequences: 5004
Number of extensions: 38548
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)