Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N19
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 100 6e-22
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 95 2e-20
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 85 5e-17
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 80 1e-15
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849 28 4.1
05_04_0361 - 20648383-20649942 27 7.2
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 27 7.2
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 27 9.6
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 100 bits (240), Expect = 6e-22
Identities = 58/134 (43%), Positives = 72/134 (53%)
Frame = +3
Query: 84 GKGISQSALPYXRRCPYLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS* 263
GKGIS SA+PY R P + ++ +P ++ +P S
Sbjct: 8 GKGISSSAIPYKRTPPSWVKTAAADV-EEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSV 66
Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
+ I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKF A
Sbjct: 67 TGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126
Query: 444 RYYKTXSVLPPNWK 485
RYYK LPP WK
Sbjct: 127 RYYKRTKKLPPTWK 140
Score = 68.1 bits (159), Expect = 4e-12
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXPQVSLPA--LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS 235
MGRMH+ G G + ++ P P +K A DV+E I K KKG PSQIGV+LRD
Sbjct: 1 MGRMHSRGKG---ISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQ 57
Query: 236 HGVAQVRFVTGKKILR 283
HG+ V+ VTG KILR
Sbjct: 58 HGIPLVKSVTGSKILR 73
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 95.5 bits (227), Expect = 2e-20
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +3
Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKF ARYYK
Sbjct: 113 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 172
Query: 465 VLPPNWK 485
LPP WK
Sbjct: 173 KLPPTWK 179
Score = 55.2 bits (127), Expect = 3e-08
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +2
Query: 161 VKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 283
V+E I K KKG PSQIGV+LRD HG+ V+ VTG KILR
Sbjct: 72 VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILR 112
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 84.6 bits (200), Expect = 5e-17
Identities = 50/134 (37%), Positives = 69/134 (51%)
Frame = +3
Query: 84 GKGISQSALPYXRRCPYLR*N*LPTM*RNKFTNLERRVSLPHKLV*C*GIHMELPK*DS* 263
GKG+S S LPY R P + + ++ LP ++ +P
Sbjct: 8 GKGMSCSVLPYRRAAPAWVKTSASEV-EEMIVRVAKKGQLPSQIGAILRDAHAVPLAQGV 66
Query: 264 LAKRSSAIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXA 443
+ ++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KF
Sbjct: 67 TGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLT 126
Query: 444 RYYKTXSVLPPNWK 485
RYY+ +P +K
Sbjct: 127 RYYRLAKKIPAFFK 140
Score = 60.5 bits (140), Expect = 8e-10
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +2
Query: 62 MGRMHAPG*GYLPVGAALXP-QVSLPA-LKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS 235
MGRMH+ G G + ++ P + + PA +K +A +V+E I ++ KKG PSQIG +LRD+
Sbjct: 1 MGRMHSSGKG---MSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDA 57
Query: 236 HGVAQVRFVTGKKILR 283
H V + VTG KILR
Sbjct: 58 HAVPLAQGVTGGKILR 73
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/64 (60%), Positives = 43/64 (67%)
Frame = +3
Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS F RYYK
Sbjct: 131 ILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTK 190
Query: 465 VLPP 476
LPP
Sbjct: 191 KLPP 194
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 158 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKIL 280
+V+E I K K G SQIGV+LR HG+ V+ + KIL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKIL 129
>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
Length = 365
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 76 RSWVRVSPSRRCLTAAGVPTCVEIDCRRCKGTNLQTWKEGSHSLT---NWCNAEGFTWSC 246
R+ + P+ RC G+P+ + C RC+ TN + +++L+ ++C + W+
Sbjct: 108 RAQAQQGPASRC---GGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTK 164
Query: 247 PSKIRN 264
+RN
Sbjct: 165 GGVLRN 170
>05_04_0361 - 20648383-20649942
Length = 519
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 103 DWEIPLPRSVHTTHVCGFLLNRRSDXRQQEKP 8
DWEIP P + + GF + RR R KP
Sbjct: 481 DWEIPPPGELDMSDDPGFTVRRRIPLRLVAKP 512
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 7 SVSLVVVXQIGDLVKS--RKHGSYARSWVRVSPSRRCLTAA 123
++ L+V QI + R G+ +WVR PS+RC+ A
Sbjct: 86 AIQLMVTAQISRSPRQTMRYRGNRLTTWVREPPSKRCVKQA 126
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 64 GSYARSWVRVSPSRRCLTA 120
G YARSW+R SR+ L A
Sbjct: 624 GGYARSWLRPKQSRQALDA 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,609
Number of Sequences: 37544
Number of extensions: 264584
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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