Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N19
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   103   6e-23
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    31   0.53 
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical ...    27   6.5  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   8.6  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   8.6  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  103 bits (248), Expect = 6e-23
 Identities = 47/78 (60%), Positives = 59/78 (75%)
 Frame = +3

Query: 285 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFXXXXXXXXXXXXARYYKTXS 464
           I+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+            ARYYKT  
Sbjct: 74  ILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKR 133

Query: 465 VLPPNWKYESSTASALVA 518
            LPP WKYES TA++LV+
Sbjct: 134 QLPPTWKYESGTAASLVS 151



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +2

Query: 62  MGRMHAPG*GYLPVGAALXPQVSLPAL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSH 238
           MGRMH PG G     +A+  + S+P+  K+TA++V++QI K+ KKGL PSQIGV+LRDSH
Sbjct: 1   MGRMHNPGKGMAK--SAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSH 58

Query: 239 GVAQVRFVTGKKILR 283
           GV QVR + G KI R
Sbjct: 59  GVGQVRRLAGNKIFR 73


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  MGRMHAPG*GYLPVGAALXPQVSLPALKLTADDVKEQ 172
           MG ++  G G L    +L P + LPALK   ++VKE+
Sbjct: 149 MGNINEQGTGLLDFSKSLFPFLQLPALKNETENVKEE 185


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 172 NLQTWKEGSHSLTNWCNAEGFTW 240
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 172 NLQTWKEGSHSLTNWCNAEGFTW 240
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical
           protein F22E5.11 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 356 CNSFLDQVVKILR*VRS*THCLHDSGGSFCQLRILLGQLHVNPSALHQF 210
           C  FL+ V  +LR V      +  + G+  +L  L+GQL +    L +F
Sbjct: 263 CREFLEAVEDVLRFVEGNIDPISSTAGNIIRLLQLVGQLRIFQDYLGRF 311


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 427 GFTDWPVITKLXVCFLLTG 483
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 427 GFTDWPVITKLXVCFLLTG 483
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,323
Number of Sequences: 27780
Number of extensions: 223582
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)