Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N18
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 177 4e-45
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 167 6e-42
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 109 2e-24
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.8
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 27 8.8
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 8.8
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 177 bits (431), Expect = 4e-45
Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 1/113 (0%)
Frame = +3
Query: 117 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 296
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 297 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKILGFFF 452
RFDV + +IE WT LLPSRQFGY+VLTTS GIMDHE ARRK++GGK+LGFF+
Sbjct: 78 RFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +2
Query: 65 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 151
MVR++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 167 bits (405), Expect = 6e-42
Identities = 79/109 (72%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = +3
Query: 117 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 296
+ GK + P+SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISP
Sbjct: 18 EKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISP 77
Query: 297 RFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKIL 440
RFDV + +IE WT LLPSRQFGY+VLTTS GIMDHE ARRK++GGK L
Sbjct: 78 RFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/29 (75%), Positives = 29/29 (100%)
Frame = +2
Query: 65 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 151
MVR++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 109 bits (261), Expect = 2e-24
Identities = 50/119 (42%), Positives = 82/119 (68%), Gaps = 3/119 (2%)
Frame = +3
Query: 102 LYIMLKSEGKDKSSS--GPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLN 275
L M+ +E + K+++ P S V+V FL +M GYI +FE++D HR GKI V L GR+
Sbjct: 10 LRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIK 69
Query: 276 KCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKILGFF 449
C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHE A ++++GG++LG+F
Sbjct: 70 DCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +2
Query: 80 VLSDALKSIHNAEKRGKRQVLIRP 151
+L+DAL+++ NAE+RGK L++P
Sbjct: 5 ILNDALRTMVNAERRGKATALLQP 28
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 222 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 323
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 240 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 335
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 59 LAMVRMNVLSDALKSIHNAEKRGKRQVLIRPCF 157
+ ++ L+ + K H+ +KRGKR+V RP F
Sbjct: 189 IGSLKKKALNASNKLTHSLKKRGKRKVENRPSF 221
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 240 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 335
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,977
Number of Sequences: 37544
Number of extensions: 225870
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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