Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N18
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   187   4e-48
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  187 bits (456), Expect = 4e-48
 Identities = 89/113 (78%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
 Frame = +3

Query: 117 KSEGKDKSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISP 296
           +  GK +    PASKVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISP
Sbjct: 18  EKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISP 77

Query: 297 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXARRKHLGGKILGFFF 452
           R ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHE ARRKHLGGKILGFFF
Sbjct: 78  RLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130



 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +2

Query: 65  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 151
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRP 29


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 135  KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 251
            +SSSGP++     F+T +   GY   F  VD   +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 135  KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 251
            +SSSGP++     F+T +   GY   F  VD   +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 135  KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 251
            +SSSGP++     F+T +   GY   F  VD   +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 135  KSSSGPASKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 251
            +SSSGP++     F+T +   GY   F  VD   +G I+
Sbjct: 2687 QSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIM 2725


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 350 TTVWL-PSPYNKWW 388
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 219 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 338
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,693
Number of Sequences: 27780
Number of extensions: 194172
Number of successful extensions: 419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)