Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N17
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   4.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 304 SSVQRLMSKAYLSSKLDRN 248
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 304 SSVQRLMSKAYLSSKLDRN 248
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 189 HPGYFGKLGMR 221
           HP YFGK G +
Sbjct: 303 HPTYFGKTGRK 313


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 346 HQYCQSWILQVARQRQTPQTTCHSKS 423
           H   ++W+    R + TPQ+   S++
Sbjct: 238 HLERKAWVASFGRPKMTPQSLLPSQT 263


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 142 PRPPGCLRCFPIRP 101
           P P G L  +P RP
Sbjct: 65  PSPRGALGAYPFRP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,041
Number of Sequences: 336
Number of extensions: 2496
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)