Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N17
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    69   4e-13
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    69   5e-13
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    29   0.31 
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   8.8  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 33/65 (50%), Positives = 35/65 (53%)
 Frame = +3

Query: 45  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 225 FHFSK 239
           FH  K
Sbjct: 61  FHLMK 65



 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = +1

Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
           L KN  + P +NLD+LWTLV  +TR KY        PV    QS   +V  + + P T  
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122

Query: 412 HSKSKVLLKISREXNQXCG 468
             +++ + + + E  +  G
Sbjct: 123 IIQTRYVSRRAEEKIKQAG 141


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 33/65 (50%), Positives = 35/65 (53%)
 Frame = +3

Query: 45  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 225 FHFSK 239
           FH  K
Sbjct: 61  FHLMK 65



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = +1

Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
           L KN  + P +NLD+LWTL+  + R KY        PV    QS   +V  + + P+T  
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122

Query: 412 HSKSKVLLKISREXNQXCG 468
             +++ + + + E  +  G
Sbjct: 123 IVQTRYVSRRAEEKIKQAG 141


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 265 NLDKLWTLVSEQTRLKYASAPDGKVP--VHQYCQSWILQVARQRQTPQTTCHSKSKVLLK 438
           NL K W  +S     K++  P+G +P    +   SW +       TP TT  S +   LK
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLK 382

Query: 439 IS 444
            S
Sbjct: 383 CS 384


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 295 QRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKYPGW 188
           ++ + K ++S    +NSCSL  W  LI S  K  GW
Sbjct: 307 EQFLDKVFISLLSAKNSCSLKMW--LIHSFNK--GW 338


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 301 SVQRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKY 197
           + +RL++++YL S L  +S S  +   L  S+PK+
Sbjct: 332 AARRLVARSYLRSPLHGSSPSASRHTALRTSIPKF 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,408
Number of Sequences: 5004
Number of extensions: 39815
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)