Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N17
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 76 1e-14
03_04_0027 + 16593133-16593573 75 3e-14
02_01_0563 + 4134954-4135388 75 3e-14
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 27 6.7
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394... 27 6.7
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 27 6.7
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 27 8.8
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 27 8.8
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 8.8
03_02_0220 - 6531255-6532667 27 8.8
>07_03_1250 - 25183375-25183815
Length = 146
Score = 76.2 bits (179), Expect = 1e-14
Identities = 35/62 (56%), Positives = 37/62 (59%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 225 FH 230
FH
Sbjct: 61 FH 62
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +1
Query: 238 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTCHS 417
+NK + P +N+++LW++V + + A A GK P+ Q +V + P+
Sbjct: 65 RNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVV 122
Query: 418 KSKVLLKISREXNQXCG 468
K+K++ K++ + + G
Sbjct: 123 KAKLISKVAEKKIKAAG 139
>03_04_0027 + 16593133-16593573
Length = 146
Score = 74.9 bits (176), Expect = 3e-14
Identities = 35/62 (56%), Positives = 36/62 (58%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 225 FH 230
FH
Sbjct: 61 FH 62
Score = 35.5 bits (78), Expect = 0.025
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 241 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQV-ARQRQTPQTTCHS 417
N+ CP +N+++LW++V K A A GK PV Q +V + PQ
Sbjct: 66 NRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVV 122
Query: 418 KSKVLLKISREXNQXCG 468
K+K++ K++ + + G
Sbjct: 123 KAKLISKVAEKKIKAAG 139
>02_01_0563 + 4134954-4135388
Length = 144
Score = 74.9 bits (176), Expect = 3e-14
Identities = 35/62 (56%), Positives = 36/62 (58%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 225 FH 230
FH
Sbjct: 61 FH 62
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 241 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQV-ARQRQTPQTTCHS 417
N+ CP +N+++LW++V + A A GK PV Q +V + P+
Sbjct: 66 NRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVV 120
Query: 418 KSKVLLKISREXNQXCG 468
K+K++ K++ + + G
Sbjct: 121 KAKLISKVAEKKIKAAG 137
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 171 FCDGAHHQHYHDLLDAYG 118
+C+G HH H H D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149
>02_05_0636 +
30536717-30537022,30538836-30538952,30539026-30539478,
30539589-30540647
Length = 644
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 349 DERGPCHLEQMHTSAS-SVQRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKYPGWYLSML 173
D R P LE M S + +A++ +D + + K + + ++ P + L L
Sbjct: 272 DFRCPISLELMRDPVIVSTGQTYERAFIQRWIDCGNRTCPKTQLKLQNITLTPNYVLRSL 331
Query: 172 IL*WCSPPALPRP 134
IL WC + P
Sbjct: 332 ILQWCEEKGIEPP 344
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 154 PPALPRPPGCLRCFPIRPCP 95
PPA P PP L C P+ P P
Sbjct: 10 PPAPPSPPPALPCDPMPPPP 29
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 432 KNFAFTMTGCLGSLPLPSNL*YPALTILMNGDLAIWSRCILQPRLFRD 289
K + +TG G PLPS++ P+ I + G A+W L+P + RD
Sbjct: 284 KQHPWMLTGS-GKPPLPSDVQVPSRVIALEGWGALWRG--LRPGMTRD 328
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 157 SPP-ALPRPPGCLRCFPIRPCP 95
SPP LP PPG C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 334 KVPVHQYCQSWILQVARQRQTPQTTCHSKSKVLLKISREXNQXCGWC 474
K VH Y S ILQ QR + + V + I N+ WC
Sbjct: 433 KSTVHTYLDSAILQHQLQRLSEHNLLKATPSVFVVIQAIVNEGAVWC 479
>03_02_0220 - 6531255-6532667
Length = 470
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -3
Query: 310 SASSVQRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKYPGWYLSMLIL*WCSPPALPRP 134
S++S+ R +S A+ S +S L K L+P LP P LS+ L W PP+ P P
Sbjct: 36 SSTSLPRALSSAFPSPS---DSFPLGKLPSLLPLLPS-P--LLSLRFLLWRLPPSSPLP 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,200
Number of Sequences: 37544
Number of extensions: 272638
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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