Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N17
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 84 2e-16
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 84 2e-16
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 84 2e-16
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 84 2e-16
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 83 4e-16
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 81 2e-15
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 40 0.007
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 31 1.8
AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas... 31 1.8
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 31 1.8
AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas... 31 1.8
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 31 1.8
AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. 31 1.8
AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein. 30 4.1
AY766461-7|AAX07304.1| 68|Homo sapiens CC chemokine ligand 4L2... 29 7.2
AY766461-6|AAX07302.1| 103|Homo sapiens CC chemokine ligand 4L2... 29 7.2
AY766458-1|AAX07317.1| 103|Homo sapiens CC chemokine ligand 4L2... 29 7.2
AY766457-1|AAX07316.1| 68|Homo sapiens CC chemokine ligand 4L2... 29 7.2
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 29 9.5
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/75 (49%), Positives = 45/75 (60%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 225 FHFSKEQEFLSSFEL 269
+H + Q F + L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
L +N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 412 HSKSKVLLKISREXNQXCG 468
K+K + + E + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
Score = 36.7 bits (81), Expect = 0.048
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 338 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
+P I++V++ PKQPVIV I VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/75 (49%), Positives = 45/75 (60%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 225 FHFSKEQEFLSSFEL 269
+H + Q F + L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
L +N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 412 HSKSKVLLKISREXNQXCG 468
K+K + + E + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
Score = 36.7 bits (81), Expect = 0.048
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 338 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
+P I++V++ PKQPVIV I VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/75 (49%), Positives = 45/75 (60%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 225 FHFSKEQEFLSSFEL 269
+H + Q F + L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 53.6 bits (123), Expect = 4e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPV 345
L +N++FCP +NLDKLWTLVSEQTR+ A G P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPI 100
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 84.2 bits (199), Expect = 2e-16
Identities = 37/75 (49%), Positives = 45/75 (60%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 225 FHFSKEQEFLSSFEL 269
+H + Q F + L
Sbjct: 61 YHLKRNQSFCPTVNL 75
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
L +N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 412 HSKSKVLLKISREXNQXCG 468
K+K + + E + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
Score = 36.7 bits (81), Expect = 0.048
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 338 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
+P I++V++ PKQPVIV I VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 83.4 bits (197), Expect = 4e-16
Identities = 36/70 (51%), Positives = 43/70 (61%)
Frame = +3
Query: 60 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFSK 239
+KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM+++H +
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64
Query: 240 EQEFLSSFEL 269
Q F + L
Sbjct: 65 NQSFCPTVNL 74
Score = 58.4 bits (135), Expect = 1e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
L +N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + P+
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 412 HSKSKVLLKISREXNQXCG 468
K+K + + E + G
Sbjct: 122 IVKAKFFSRRAEEKIKSVG 140
Score = 36.7 bits (81), Expect = 0.048
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 338 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
+P I++V++ PKQPVIV I VGGACVL A
Sbjct: 97 APIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 81.4 bits (192), Expect = 2e-15
Identities = 36/75 (48%), Positives = 45/75 (60%)
Frame = +3
Query: 45 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 225 FHFSKEQEFLSSFEL 269
++ + Q F + L
Sbjct: 61 YNLKRNQSFCPTVNL 75
Score = 56.0 bits (129), Expect = 7e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
L +N++FCP +NLDKLWTLVSEQTR+ A G P+ +S +V + + +
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPV 122
Query: 412 HSKSKVLLKISREXNQXCG 468
K+K+ + + E + G
Sbjct: 123 IVKAKLFSRRAEEKIKSVG 141
Score = 33.5 bits (73), Expect = 0.44
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 338 SPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
+P I++V++ KQPVIV I VGGACVL A
Sbjct: 98 APIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 39.5 bits (88), Expect = 0.007
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 262 LNLDKLWTLVSEQTRLKYASAPDGKVPV 345
+NLDKLWTLVSEQTR+ A G P+
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAPI 28
>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
Length = 5183
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.
Length = 1678
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 411 TGCLGSLPLPSNL*YPALTIL-MNGDLAIWSRCILQPRLFRD*CPKLI 271
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541
>AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein.
Length = 126
Score = 30.3 bits (65), Expect = 4.1
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 220 LIPSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 62
L P+LPK+PG ++ L W S P P G + + PCP PL FLV+
Sbjct: 53 LSPALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104
>AY766461-7|AAX07304.1| 68|Homo sapiens CC chemokine ligand 4L2bd2
protein.
Length = 68
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 331 GKVPVHQYCQSWILQVARQRQTPQT 405
GK P+HQ C +W + RQR+ P T
Sbjct: 43 GKDPIHQSCPTWTM--VRQRKMPTT 65
>AY766461-6|AAX07302.1| 103|Homo sapiens CC chemokine ligand 4L2f
protein.
Length = 103
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 331 GKVPVHQYCQSWILQVARQRQTPQT 405
GK P+HQ C +W + RQR+ P T
Sbjct: 78 GKDPIHQSCPTWTM--VRQRKMPTT 100
>AY766458-1|AAX07317.1| 103|Homo sapiens CC chemokine ligand 4L2f
protein.
Length = 103
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 331 GKVPVHQYCQSWILQVARQRQTPQT 405
GK P+HQ C +W + RQR+ P T
Sbjct: 78 GKDPIHQSCPTWTM--VRQRKMPTT 100
>AY766457-1|AAX07316.1| 68|Homo sapiens CC chemokine ligand 4L2bd2
protein.
Length = 68
Score = 29.5 bits (63), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 331 GKVPVHQYCQSWILQVARQRQTPQT 405
GK P+HQ C +W + RQR+ P T
Sbjct: 43 GKDPIHQSCPTWTM--VRQRKMPTT 65
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.1 bits (62), Expect = 9.5
Identities = 12/43 (27%), Positives = 15/43 (34%)
Frame = +1
Query: 361 SWILQVARQRQTPQTTCHSKSKVLLKISREXNQXCGWCLCTIC 489
+W L Q PQ + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,428,306
Number of Sequences: 237096
Number of extensions: 1487320
Number of successful extensions: 6638
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6631
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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