Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N17
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    88   3e-18
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    40   0.001
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    28   3.4  
Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 39/69 (56%), Positives = 45/69 (65%)
 Frame = +3

Query: 45  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 224
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 225 FHFSKEQEF 251
           FH +K Q +
Sbjct: 61  FHLNKNQHY 69



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +1

Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
           L KN+++CP +N+++LW+LV ++ R K   A  GK PV    +    +V  +   P+T  
Sbjct: 63  LNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPL 119

Query: 412 HSKSK 426
             K++
Sbjct: 120 IVKAR 124



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +2

Query: 335 RSPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
           +SP I+  K            P+ P+IV            I   GGACVL A
Sbjct: 94  KSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +1

Query: 232 LAKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVHQYCQSWILQVARQRQTPQTTC 411
           L KN+++CP +N+++LW+LV ++ R K   A  GK PV    +    +V  +   P+T  
Sbjct: 6   LNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPL 62

Query: 412 HSKSK 426
             K++
Sbjct: 63  IVKAR 67



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +2

Query: 335 RSPFINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 490
           +SP I+  K            P+ P+IV            I   GGACVL A
Sbjct: 37  KSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +3

Query: 18  FKSLTEH*TMATSK-KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD---- 182
           FKS+    +M ++K KK+ K  GH                   N GG   H + M+    
Sbjct: 116 FKSIRSKKSMKSTKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSE 175

Query: 183 -KYHPGYFGKLGMRNFHFSK 239
            ++ P  F KLG   F+F K
Sbjct: 176 EEHEPSGFKKLGKSFFNFKK 195


>Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical
           protein F35E12.6 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
 Frame = -2

Query: 323 ADAYFSLV---CSETNVQSL---SKFKTGQKFLFFAKVEISHTKFAKVS 195
           ADAYF+++   CS  N+++L   SK+K G  +L  A++  +    AK++
Sbjct: 265 ADAYFTVICDGCSSINIKTLIFDSKYKNGAGYLEVAEMSPTQKLPAKLN 313


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 151 PALPRPPGCLRCFPIRPCP 95
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 150 GGEHHHRINMDKYHPGYFGKLGMRNFHFSKEQEF 251
           G  HH +++   +  GY   LG+R+F +S+ QE+
Sbjct: 401 GNGHHGKVDFGTWGGGYSDNLGVRDF-WSQTQEY 433


>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 331 HLEQMHTSASSVQRLMSKAYLSSKLDRNSCSLLKWKFLIPSLPKYPGWYLSMLIL 167
           HLE +H S S   +       SS +   SC  L WK  I     +  ++L+++ L
Sbjct: 169 HLESLHCSPSMYTKNWFATLFSSSMSTESCHEL-WKLYIEQGDPFLVFHLAIVFL 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,805
Number of Sequences: 27780
Number of extensions: 230955
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)