Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N16
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    30   0.26 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    28   1.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   7.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.7  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   9.7  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 209 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITK 328
           S    +V  A+  +D++A   E+RRR + +KL SFFA  K
Sbjct: 368 SGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQK 407


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 521 SNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHV 661
           S   ++H  L+   WY     D +++   S  P + ++ NG IY +V
Sbjct: 151 SGFFYKHPLLLKYQWYWRVEPDVAFTCDISYDPFYYMEENGKIYGYV 197


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 636 FFNANDGVMLAE*LYDPSPFGXEYQSPYTKPL--CCQI--KFELSKFVLNSCS 490
           F    +G+ L E   DP   G  YQSP    L  CC++     +++FV  S S
Sbjct: 45  FLRVREGLYLYENGLDPYSGGVFYQSPLLLILNYCCELLGGISVTRFVYTSIS 97


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 SMFRQPSAPKTDINNPSSAPRAPAVNMF 451
           S+  Q   P+  + NPS AP A  VN+F
Sbjct: 258 SLVPQMPYPQNGMYNPSVAPPASLVNLF 285


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -3

Query: 653 DKWTHYFLTQMMVLCLLSDCMIHHHSDXNTNLHTPNHCAAKLNLNC 516
           ++W    +  + V  LL+   +H+  D      T  HC  +   NC
Sbjct: 363 ERWGDAPVHSLAVGLLLNRSQVHYFRDLGYQHSTIQHCGQEYGCNC 408


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 380 QPSAPKTDINNPSSAPRAPA 439
           QP AP T   NPS +P AP+
Sbjct: 316 QPPAPSTLQFNPSPSPAAPS 335


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 206 ISHDGSSVVAADDNLDINARVEEERRRM 289
           ++ D S +V  DDN        EE RRM
Sbjct: 727 VAKDASDIVLTDDNFSSIVNAIEEGRRM 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,036
Number of Sequences: 5004
Number of extensions: 48264
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)