Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N16
(664 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007262-1|AAP35926.1| 686|Homo sapiens cleft lip and palate as... 99 2e-20
BC012359-1|AAH12359.1| 669|Homo sapiens cleft lip and palate as... 99 2e-20
BC004865-1|AAH04865.1| 686|Homo sapiens CLPTM1 protein protein. 99 2e-20
AK223553-1|BAD97273.1| 669|Homo sapiens cleft lip and palate as... 99 2e-20
AF037339-1|AAC98151.1| 669|Homo sapiens cleft lip and palate tr... 99 2e-20
AF037338-1|AAC97420.1| 669|Homo sapiens cleft lip and palate tr... 99 2e-20
>BT007262-1|AAP35926.1| 686|Homo sapiens cleft lip and palate
associated transmembrane protein 1 protein.
Length = 686
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
>BC012359-1|AAH12359.1| 669|Homo sapiens cleft lip and palate
associated transmembrane protein 1 protein.
Length = 669
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
>BC004865-1|AAH04865.1| 686|Homo sapiens CLPTM1 protein protein.
Length = 686
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
>AK223553-1|BAD97273.1| 669|Homo sapiens cleft lip and palate
associated transmembrane protein 1 variant protein.
Length = 669
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
>AF037339-1|AAC98151.1| 669|Homo sapiens cleft lip and palate
transmembrane protein 1 protein.
Length = 669
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
>AF037338-1|AAC97420.1| 669|Homo sapiens cleft lip and palate
transmembrane protein 1 protein.
Length = 669
Score = 98.7 bits (235), Expect = 2e-20
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +2
Query: 320 ITKSLIIRALVXYFITSMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQE 499
+ K ++ R + + I+S FR+ AP+ D P APR + N+F T+++++ Y+SE E
Sbjct: 55 VIKGVLFRIFIIWAISSWFRRGPAPQ-DQAGPGGAPRVASRNLFPKDTLMNLHVYISEHE 113
Query: 500 FNTNFD-NSNLIWQHSGLVYGDWYSXPNGDGSYSHSASITPSFALKNNGSIYLHVY 664
T+F+ S L W+ LVYGDW S N DG Y H A + +++ NGSIY+HVY
Sbjct: 114 HFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVY 169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,696,066
Number of Sequences: 237096
Number of extensions: 1634678
Number of successful extensions: 2635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2623
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -