Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N16
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -3

Query: 644 THYFLTQMMVLCLLSDCMIHHHSDXNTNLHTPNHCAAKLNLNCQNLY*ILVQTDNSTCLV 465
           +H  +T++  L +     +   ++   NL  PN    K+NL   ++Y  +++T   T L+
Sbjct: 603 SHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLL 662


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 53  LHWFKIKCRYLRRY 12
           L+W  I  +YLRRY
Sbjct: 107 LNWQPIATKYLRRY 120


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 53  LHWFKIKCRYLRRY 12
           L+W  I  +YLRRY
Sbjct: 122 LNWQPIATKYLRRY 135


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 444 ICLQMELY*TCTVICLNKNLIQILTIQ 524
           +C+ + L  T T++CL    I I+  Q
Sbjct: 740 LCVAISLSATVTLVCLYSPKIYIILFQ 766


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 444 ICLQMELY*TCTVICLNKNLIQILTIQ 524
           +C+ + L  T T++CL    I I+  Q
Sbjct: 830 LCVAISLSATVTLVCLYSPKIYIILFQ 856


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,338
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)