Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N14
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 236 1e-63
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 236 1e-63
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 149 3e-37
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 149 3e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 149 3e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 89 5e-19
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 45 8e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 29 0.53
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 5.0
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 5.0
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 8.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 236 bits (578), Expect = 1e-63
Identities = 110/123 (89%), Positives = 115/123 (93%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLXGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 397
IQKESTLHLVLRL GG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 398 LRP 406
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 236 bits (578), Expect = 1e-63
Identities = 110/123 (89%), Positives = 115/123 (93%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLXGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 397
IQKESTLHLVLRL GG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 398 LRP 406
LRP
Sbjct: 121 LRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (360), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 38 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 217
+QIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 218 IQKESTLHLVLRLXGG 265
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 88.6 bits (210), Expect = 5e-19
Identities = 38/75 (50%), Positives = 55/75 (73%)
Frame = +2
Query: 44 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 223
I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62
Query: 224 KESTLHLVLRLXGGT 268
S LHLVL L GG+
Sbjct: 63 GGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 44.8 bits (101), Expect = 8e-06
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 32 TQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
T + + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 212 YNIQKESTLHLVLRL 256
Y IQ ++HLV L
Sbjct: 62 YKIQDGHSIHLVKTL 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +2
Query: 68 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 229
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 65 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 238
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.7 bits (61), Expect = 0.53
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 32 TQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 211
++ +I V T+ K +V + T+ +K I P D+ +LI AG+ L + L +
Sbjct: 2 SEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
Query: 212 --YNIQKESTLHLVLRLXGGT 268
++ T HLV+ + T
Sbjct: 62 ILHDATDLVTFHLVIAVFNST 82
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.0
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = +2
Query: 53 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 193
K TGKT + + + ++ K+KIQ +P + L + GK +
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Query: 194 GRTLSDYNIQKESTLHLVLRLXGGTIEPSLRILAMKYNCEKMICRKCYARLHPRAT 361
G TL D I+ T+H+V+ G ++ + + +A C + + L P T
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFT 204
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 112 IFDSVGSFHLQCNGLPRKGFDEYLQ 38
IF VG+F C+ L ++GF E L+
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPLR 67
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.7
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +2
Query: 59 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 229
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 230 STLH 241
LH
Sbjct: 154 QVLH 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,311
Number of Sequences: 5004
Number of extensions: 43306
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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